View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_15 (Length: 466)
Name: NF4267_high_15
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 81 - 458
Target Start/End: Original strand, 17028102 - 17028479
Alignment:
| Q |
81 |
taaatgagcataaaatattaaaatatgaatgcttcagnnnnnnnngtttggtctcaacaagtgacaatcgccacctatccttcgaaaccaaccttcccca |
180 |
Q |
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| T |
17028102 |
taaatgagcataaagtattataatatgaatgcttcagttttttttgtttggtctcaacaagtgacaaccgccacctgtccttcaaaaccaacctttccca |
17028201 |
T |
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| Q |
181 |
tggtgggaaacaagattcatttcccaagttaaacctcacctgcaaaacatacatgtataaagcatgatactcttgatcaattaaaccacattggaaatat |
280 |
Q |
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| T |
17028202 |
tggtaggaaacaagattcatttcccaggttaaacatcacctgcaaaacatacatgtataaaacatgatactcttgatcaattaaaccacattggaaatat |
17028301 |
T |
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| Q |
281 |
taagagaaatggaacaaacttaccatataggtataaatttagaatatgaaaaatatannnnnnnagcaacaaatttcacacttaccttcatttccgctac |
380 |
Q |
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| T |
17028302 |
taagagaaatggaacaaacttaccatataggtataaatttagaatatgaaaaatatatttttttagccacaaatttcacacttaccttcacttccgctac |
17028401 |
T |
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| Q |
381 |
tatttgtaaaaataaaaagaacagaaattcattggaggtgcattgaatgcattgaccgtgataacccaaattcatttc |
458 |
Q |
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| T |
17028402 |
tattggtaaaaataaaaagaacagaaattcattggaggtgcattgaatgcattgaccgtgataacccaaattcatttc |
17028479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 17027426 - 17027475
Alignment:
| Q |
19 |
atatagtgggccgatccaaacctcaaaaatacatcattaacatcaaaact |
68 |
Q |
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| T |
17027426 |
atataatgggccgatccaaaactcaaaaacacatcattaacatcaaaact |
17027475 |
T |
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