View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_high_17 (Length: 462)

Name: NF4267_high_17
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_high_17
NF4267_high_17
[»] chr5 (1 HSPs)
chr5 (335-452)||(34669324-34669441)
[»] chr3 (3 HSPs)
chr3 (177-319)||(18186822-18186965)
chr3 (368-452)||(18186518-18186602)
chr3 (94-149)||(18187249-18187304)
[»] chr4 (2 HSPs)
chr4 (158-238)||(24833350-24833432)
chr4 (64-145)||(24833619-24833700)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 335 - 452
Target Start/End: Complemental strand, 34669441 - 34669324
Alignment:
Q  335 tttcaagattttatccatacatgatatacgtccactcttgttctttatgtgtctttcagaatatgatgttactcaacatagatattgttgtgacagttaa 434  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||| ||||||    
T  34669441 tttcaagattttatccatacatgatatacgtccgctcttgttctttatgtgtcttatagaatatgatgttactgaacatagatattgttgtgatagttaa 34669342  T
Q  435 agtaaactcttgcttcat 452  Q
    ||||||||||||||||||    
T  34669341 agtaaactcttgcttcat 34669324  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 18186965 - 18186822
Alignment:
Q  177 gagccaaatgtttaggttctgaggtacacaccttccaatccttctcaatttcaaatttggctgcaagatttttggtagtcttatatatgcatatacctga 276  Q
    |||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||  |||||| |  |||||||||     
T  18186965 gagccaaagggttaggttctgaggtacacacctttcaatccttcttaatttcaaattcggctgcaagatttttggcagcattatatgtaaatatacctgt 18186866  T
Q  277 ataaaagaaatgatccaattttatatgcatt-atattttgagct 319  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  18186865 ataaaagaaatgatccaattttatatgcattggtattttgagct 18186822  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 452
Target Start/End: Complemental strand, 18186602 - 18186518
Alignment:
Q  368 actcttgttctttatgtgtctttcagaatatgatgttactcaacatagatattgttgtgacagttaaagtaaactcttgcttcat 452  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||| |||||| | ||  ||||||| |||| |||||||||||    
T  18186602 actcctgttctttatgtgtcttttagaatatgatgttagtcaacatatatattgctctggtagttaaattaaaatcttgcttcat 18186518  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 18187304 - 18187249
Alignment:
Q  94 attaaaattcattcgctagttaacccttatcatttgtccattaacttacaggtgtc 149  Q
    |||| |||||||| | |||||||||||| ||||  |||||||||||||||||||||    
T  18187304 attagaattcatttgttagttaacccttttcatccgtccattaacttacaggtgtc 18187249  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 24833432 - 24833350
Alignment:
Q  158 actctctttatgga--ttcctgagccaaatgtttaggttctgaggtacacaccttccaatccttctcaatttcaaatttggct 238  Q
    ||||||||||||||  |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24833432 actctctttatggagattcccgagccaaatggttaggttatgaggtacacaccttccaatccttctcaatttcaaatttggct 24833350  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 24833700 - 24833619
Alignment:
Q  64 tctataaatttgatctgaatgatttatatcattaaaattcattcgctagttaacccttatcatttgtccattaacttacagg 145  Q
    ||||||| | ||||||||||||||||||| |||| ||||  || ||||||||||| || |||||| ||||||||||||||||    
T  24833700 tctataactctgatctgaatgatttatattattagaatttgtttgctagttaacctttttcatttttccattaacttacagg 24833619  T

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