View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_18 (Length: 453)
Name: NF4267_high_18
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 5625825 - 5625399
Alignment:
| Q |
11 |
cagagatcatacaattacacaaattcaacacaaaatttaagctagacatgtcccttccaacagcatatcaagagcaccttccttcatcaccacaatggct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625825 |
cagagatcatacaattacacaaattcaacacaaaatttaagctagacatgtcccttccaacagcatatcaagagcaccttccttcatcaccacaatggct |
5625726 |
T |
|
| Q |
111 |
aaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggcctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaag |
210 |
Q |
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| T |
5625725 |
aaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggtctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaag |
5625626 |
T |
|
| Q |
211 |
aaatgggctatgaattcagctttcatggcactttatgcttatgcatcagtattaatatgttgggtacttttatgttaccgtatggcttttggtgatgaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5625625 |
aaatgggctatgaattcagctttcatggcactttatgcttatgcatcagtgctaatatgttgggttcttttatgttaccgtatggcttttggtgatgaac |
5625526 |
T |
|
| Q |
311 |
tttttccattttggggtaaaggtgcaccttcattaggtcaaaaatttcttacacatcaagcaaaagtacctgaaagcactcatttctttaagaatggtac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5625525 |
tttttccattttggggtaaaggtgcaccttcattaggtcaaaaatttcttacacatcaagcaaaagtacctgaaagtactcatttctttaagaatggtac |
5625426 |
T |
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| Q |
411 |
tgaagaagcttcaacaacacaaccact |
437 |
Q |
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| T |
5625425 |
tgaagaagcttcaacaacacaaccact |
5625399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 95 - 360
Target Start/End: Complemental strand, 25671533 - 25671268
Alignment:
| Q |
95 |
catcaccacaatggctaaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggcctacaaagcatgccaggtcttgtaattctctatgc |
194 |
Q |
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|||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||||| || |||||||||||||| |
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| T |
25671533 |
catcaccagaatggttaaacaaaggagacaacgcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgc |
25671434 |
T |
|
| Q |
195 |
aagtatggtcaaaaagaaatgggctatgaattcagctttcatggcactttatgcttatgcatcagtattaatatgttgggtacttttatgttaccgtatg |
294 |
Q |
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||| || || |||||||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||| |||||||| ||| | ||| | ||| |
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| T |
25671433 |
aagcatagtgaaaaagaaatgggcagtgaattcagctttcatggcactatatgcttttgcagcagtattaatctgttgggttcttgttgcttatagaatg |
25671334 |
T |
|
| Q |
295 |
gcttttggtgatgaactttttccattttggggtaaaggtgcaccttcattaggtcaaaaatttctt |
360 |
Q |
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| T |
25671333 |
gcttttggtgatgaacttttacctttctggggtaaaggtgcaccggctttaggacaaaaatttctt |
25671268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 39726979 - 39726850
Alignment:
| Q |
110 |
taaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggcctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||| | || | ||||| ||||| | |||||||||||||| || || || ||||||| || || || ||||| |
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| T |
39726979 |
taaacaaaggagacaactcatggcaaatgatatcagctacccttgttggaattcaaagcatgccaggactagttatcctctatggcagcatagtgaaaaa |
39726880 |
T |
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| Q |
210 |
gaaatgggctatgaattcagctttcatggc |
239 |
Q |
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| T |
39726879 |
gaaatgggctgtaaactctgctttcatggc |
39726850 |
T |
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