View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_22 (Length: 443)
Name: NF4267_high_22
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 428
Target Start/End: Original strand, 27468124 - 27468558
Alignment:
| Q |
3 |
gaacaatgttttcggataatatgatgtactcattgtt---------tgtgaatataatttctagctttactactaaacaaggtatcgtccatggactcac |
93 |
Q |
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| T |
27468124 |
gaacaatgttttcggataatatgatgtactcattgttgaaaacagttgtgaatataatttctagctttactactaaacaaggtatcgtccatggactcac |
27468223 |
T |
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| Q |
94 |
atgtgttgacaccctactaaaaaatggtatcatagaaagaaaaaattgtcacttacttgatgtttctctagttattcacttcaaagtgtctatccgataa |
193 |
Q |
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| T |
27468224 |
atgtgttgacaccctactaaaaaatggtatcatagaaagaaaaaattgtcacttacttgatgtttctctagttattcacttcaaagtgtctatccgataa |
27468323 |
T |
|
| Q |
194 |
tcatattaggattaaacagttttgattgtatcttatctaattaatcgtgtgtcatcttgtgttgtaaataaagttggtcaagtttcagttttttatatca |
293 |
Q |
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| T |
27468324 |
tcatattaggattaaacagttttgattgtatcttatctaattaatcgtgtgtcatcttgtgttgtaaataaagttagtcaagtttcagttttttatatca |
27468423 |
T |
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| Q |
294 |
tgtttcccatatgttcctattttacagaatcttgagtcttatgtaattcgttgtgttgcttttgttcatgttcatcagcaacactgaactaagttggatt |
393 |
Q |
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| T |
27468424 |
tgtttcccatatgttcctattttacagaatcttgagtcttatgtaatttgttgtgttgcttttgttcatgttcatcagcaacactgaattaagttggatt |
27468523 |
T |
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| Q |
394 |
ctcctgcgaatagacgtggctttatgggttatatc |
428 |
Q |
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| T |
27468524 |
ctcctgcgtatagacgtggctttatgggttatatc |
27468558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 395
Target Start/End: Original strand, 27469639 - 27469823
Alignment:
| Q |
210 |
cagttttgattgtatcttatctaattaatcgtgtgtcatcttgtgttgtaaataaagttggtcaagtttcagttttttatatcatgtttcccatatgttc |
309 |
Q |
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| T |
27469639 |
cagttttcattgcaacttatctaattaattgtttgtcatctcgtgttatagataaagttagtcatgtct-agcttttgatccgacaattcccttttgttc |
27469737 |
T |
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| Q |
310 |
ctattttacagaatcttgagtcttatgtaattcgttgtgttgcttttgttcatgttcatcagcaacactgaactaagttggattct |
395 |
Q |
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| T |
27469738 |
ctattttgtagaacagtgagtctcatgtatttggttgtgttgcttttgtttatattcatcagcaacaccaaactaagttggattct |
27469823 |
T |
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