View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_high_23 (Length: 438)
Name: NF4267_high_23
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 47456455 - 47456869
Alignment:
| Q |
18 |
gttaatagatccatcgaacctgatggatctgtttataagtacaaaaggacgggtggaaaaagggttcttaaaagagttgggtttagagtttagactact- |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47456455 |
gttaatagatccatcgaacctgatggatctgtcgataagtacaaaaagacgggtggaaaatgggttcttaaaagagttgggtttagagtttagactactc |
47456554 |
T |
|
| Q |
117 |
taagtatttgctcttgtgttcacaattgaaacaataaggttggtgatttctttggcaagtagttgatgtcaaatttgttttcttaaataggccattagaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47456555 |
taagtatttgctcttgtgttcacaattgaaacaataaggttggtgatttctttggcaagtagttgatgtcaaatttgttttcttaaataggccattagaa |
47456654 |
T |
|
| Q |
217 |
ggtgaattttatgaagtgtgaccaccttgatttgaggtcgatggaagcaaagacatggtgtataggctgaagatagctttatatgggataaaacaaggac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47456655 |
ggtgaattttatgaagtgtgaccaccttgatttgaggtcgatggaagcaaagacatggtgtataggctgaagatagctttatatgggataaaacaaggac |
47456754 |
T |
|
| Q |
317 |
caaagactt-aaaaacaaaatgatagactctttcttgttccagcaacgattctcccattctgcagtagttcatgttgtttatatgagggtgcagaacaaa |
415 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47456755 |
caaagacttaaaaaacaaaatgatagactctttcttgttccagcaacgattctcccattctgcagtagttcatgttgtttatgtgagggtgcagaacaaa |
47456854 |
T |
|
| Q |
416 |
gctaagatgatgatg |
430 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
47456855 |
gctaagatgttgatg |
47456869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University