View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_high_26 (Length: 411)

Name: NF4267_high_26
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_high_26
NF4267_high_26
[»] chr2 (3 HSPs)
chr2 (2-392)||(13137270-13137661)
chr2 (2-71)||(13137188-13137257)
chr2 (2-42)||(26366214-26366254)
[»] chr8 (2 HSPs)
chr8 (2-52)||(5538534-5538584)
chr8 (2-43)||(12583326-12583367)
[»] chr7 (3 HSPs)
chr7 (2-51)||(22611495-22611544)
chr7 (2-43)||(10345481-10345522)
chr7 (2-43)||(35961405-35961446)
[»] chr3 (3 HSPs)
chr3 (2-51)||(41977404-41977453)
chr3 (2-43)||(52200309-52200350)
chr3 (2-43)||(52309382-52309423)
[»] chr5 (3 HSPs)
chr5 (2-53)||(7271336-7271387)
chr5 (2-44)||(28787092-28787134)
chr5 (2-43)||(21332448-21332489)
[»] chr6 (2 HSPs)
chr6 (2-44)||(10290294-10290336)
chr6 (2-44)||(17106391-17106433)
[»] chr1 (2 HSPs)
chr1 (2-44)||(2405829-2405871)
chr1 (2-43)||(49852901-49852942)
[»] scaffold1809 (1 HSPs)
scaffold1809 (2-43)||(382-423)
[»] chr4 (4 HSPs)
chr4 (2-43)||(12786430-12786471)
chr4 (2-43)||(19821022-19821063)
chr4 (2-43)||(44165097-44165138)
chr4 (2-46)||(3720668-3720712)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 2 - 392
Target Start/End: Original strand, 13137270 - 13137661
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaacctatcatttccatttaccaaaattacaacctaaaaagatagaattatttagggaac 101  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13137270 ttattttattatttcgatgcatttttagtacacttgctaaaaatctatcatttccatttatcaaaattacaacctaaaaagatagaattatttagggaac 13137369  T
Q  102 ctttcgtgactccattggaattgataagacctttgttggaagcatatttaacaaattgagctatgatctcattgctcttcaaggatgaactattatcttc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137370 ctttcgtgactccattggaattgataagacctttgttggaagcatatttaacaaattgagctatgatctcattgctcttcaaggatgaactattatcttc 13137469  T
Q  202 tttt-ttgtatgattagactttgctccaggagaccatataccagtacgaatagtttcagctataactgcacgtatatcatcacttggatgtttgtaagga 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137470 tttttttgtatgattagactttgctccaggagaccatataccagtacgaatagtttcagctataactgcacgtatatcatcacttggatgtttgtaagga 13137569  T
Q  301 cccttcacttcaacaataaaaccttttcctctactacggtatatttttgctgcagaagaaagaccagcaaagttggtaacataatagtgtgc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13137570 cccttcacttcaacaataaaaccttttcctctactacggtatatttttgctgcagaagaaagaccagcaaagttggtaacataatagtgtgc 13137661  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 13137188 - 13137257
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaacctatcatttccatttaccaaaattac 71  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| ||||||||| |||||| |||||||||    
T  13137188 ttattttattatttcgatgcatttttagtacacttgctaaaaatctatcattttcatttatcaaaattac 13137257  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 26366214 - 26366254
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaa 42  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  26366214 ttattttattacttcgatgcatttttagtacacttactaaa 26366254  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 5538584 - 5538534
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaacctatcat 52  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||| |||||||    
T  5538584 ttattttattacttcgatacatttttagtacacttgctaaaaatctatcat 5538534  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 12583326 - 12583367
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  12583326 ttattttattatttcgatacatttttagtacacttgctaaaa 12583367  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 22611544 - 22611495
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaacctatca 51  Q
    ||||||||||| |||||| |||||||| ||||||||||||||| ||||||    
T  22611544 ttattttattacttcgatgcatttttagtacacttactaaaaatctatca 22611495  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 10345481 - 10345522
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  10345481 ttattttattacttcgatacatttttagtacacttgctaaaa 10345522  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 35961405 - 35961446
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  35961405 ttattttattacttcgatacatttttagtacactttctaaaa 35961446  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 41977404 - 41977453
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaacctatca 51  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||| ||||||    
T  41977404 ttattttattacttcgatacatttttaatacacttgctaaaaatctatca 41977453  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 52200309 - 52200350
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  52200309 ttattttattacttcgatacatttttaatacacttgctaaaa 52200350  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 52309423 - 52309382
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  52309423 ttattttattacttcgatacatttttagtacacttgctaaaa 52309382  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 7271336 - 7271387
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaacctatcatt 53  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||  ||||||||    
T  7271336 ttattttattacttcgatacatttttagtacacttgctaaaagtctatcatt 7271387  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 28787134 - 28787092
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaa 44  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||    
T  28787134 ttattttattacttcgatacatttttagtacacttgctaaaaa 28787092  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 21332489 - 21332448
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  21332489 ttattttattacttcgatacatttttagtacacttgctaaaa 21332448  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 10290294 - 10290336
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaa 44  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||    
T  10290294 ttattttattacttcgatacatttttagtacacttgctaaaaa 10290336  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 17106433 - 17106391
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaa 44  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||    
T  17106433 ttattttattacttcgatacatttttagtacacttgctaaaaa 17106391  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 2405829 - 2405871
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaa 44  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||    
T  2405829 ttattttattacttcgatacatttttagtacacttgctaaaaa 2405871  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 49852942 - 49852901
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  49852942 ttattttattacttcgatacatttttagtacacttgctaaaa 49852901  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 382 - 423
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    |||||||||||||||||| |||||||| ||||||| ||||||    
T  382 ttattttattatttcgatgcatttttagtacacttgctaaaa 423  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 12786430 - 12786471
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  12786430 ttattttattacttcgatacatttttagtacacttgctaaaa 12786471  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 19821022 - 19821063
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  19821022 ttattttattacttcgatacatttttagtacacttgctaaaa 19821063  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 44165097 - 44165138
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaa 43  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  44165097 ttattttattacttcgatacatttttagtacacttgctaaaa 44165138  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 3720668 - 3720712
Alignment:
Q  2 ttattttattatttcgatacatttttattacacttactaaaaacc 46  Q
    ||||||||||| ||||||||||||||| |||| || |||||||||    
T  3720668 ttattttattacttcgatacatttttagtacatttgctaaaaacc 3720712  T

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