View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_27 (Length: 404)
Name: NF4267_high_27
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_27 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 6718185 - 6718572
Alignment:
| Q |
17 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
6718185 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattttggtcttgctgagttataattgaattggtttaaatttg |
6718284 |
T |
|
| Q |
117 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagnnnnnnnatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6718285 |
tgtttcaactcatgaaccactcaaccattaaaatgtttcagtttttttatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
6718384 |
T |
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| Q |
217 |
cacacccctggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaagt |
316 |
Q |
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| T |
6718385 |
cacacccctagattcaagcaagtgttggtattatttttttatattcttagcaaggttaaaatctaaagaagtgataaaatattcttagttgattacaagt |
6718484 |
T |
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| Q |
317 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttt |
404 |
Q |
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| T |
6718485 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacgtgtcaaatactaagttgaatttaatttgatggtttcttt |
6718572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 34338475 - 34338861
Alignment:
| Q |
17 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
34338475 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggt-tggttgagttataattgaattggtttaaatttg |
34338573 |
T |
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| Q |
117 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagnnnnnnnatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338574 |
tgtttcaaatcatgaaccactcaaccattaaaatggttcagtttttttatcattcagtttggttcagcttagtgatatggtttcagttaaccacattttt |
34338673 |
T |
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| Q |
217 |
cacacccctggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaagt |
316 |
Q |
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| T |
34338674 |
cacacccctggattcaagcaagtgttggtattatttttttatattcttagcaaggttaaaatctaaagaagtgataaaatattcttagttgattacaagt |
34338773 |
T |
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| Q |
317 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttt |
404 |
Q |
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| T |
34338774 |
tatctgccacaattttgaagattcattgttctttgttgtttgttagacgtgtcaaatactaagttgaatttaatttgatggtttcttt |
34338861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 23099545 - 23099933
Alignment:
| Q |
17 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
116 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23099545 |
actaaatctatacaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
23099644 |
T |
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| Q |
117 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagnnnnnnn-atcattcagtttggttcagcttagtgatatggtttcagttaaccacatttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23099645 |
tgtttcaactcatgaaccactcaaccattaaaatggttcagttttttttaccattcagtttcgttcagcttagtgatatggtttcagttaaccacatttt |
23099744 |
T |
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| Q |
216 |
tcacacccctggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaag |
315 |
Q |
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| T |
23099745 |
tcacacccctggattcaagcaagtgttggtattatttttttatattcttagcaaggttaaaatctaaagaagtgataaaatattcttagttgattacaag |
23099844 |
T |
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| Q |
316 |
ttatctgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttt |
404 |
Q |
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| T |
23099845 |
ttatctgccacaattttgaagattcattgttctttgttgtttgttagacgtgtcaaatactaagttgaatttaatttgatggtttcttt |
23099933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 27085802 - 27085671
Alignment:
| Q |
17 |
actaagtctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27085802 |
actaaatctatgcaatgtatcttatgtattttatgttttgccttggatcaatgattctattctggtctggctgagttataattgaattggtttaaatttg |
27085703 |
T |
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| Q |
117 |
tgtttcaactcatgaaccactcaaccattaaa |
148 |
Q |
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| T |
27085702 |
tgtttcaactcatgaaccactcaaccattaaa |
27085671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 5195172 - 5195089
Alignment:
| Q |
321 |
tgccacaattttgaagattcattgttctttgttgtttgttagacttgtcaaatactaagttgaatttaatttgatggtttcttt |
404 |
Q |
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| T |
5195172 |
tgccacaattgtgaagatgcattgttctttgttgtttgttagatgtgtcaaatactaagttgaatttaatttgatggtttcttt |
5195089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 5195303 - 5195212
Alignment:
| Q |
226 |
ggattcaagcaagtgttggtattattttttgatattcttagcaaggtttaaatctaaagaagtgataaaatattcttagttgattacaagttatc |
320 |
Q |
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| T |
5195303 |
ggattcaagcaagtgtc---attatttttgtatattcttagcaaggttaaaatctaaagtagtgataaaatattcttagttgatgacaagttatc |
5195212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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