View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_28 (Length: 399)
Name: NF4267_high_28
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 6229315 - 6229119
Alignment:
| Q |
11 |
cagagagcttaatttgcttatgtttctagggagaaagctgaattcttctattcatggttcactttcgtattttgagccactcaaccttcatgatctttcc |
110 |
Q |
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| T |
6229315 |
cagagagcttaatttgcttctgtttcaagagagaaagctgaattcttctattcatggttcactttcgtattttgagccactcaacctttatgatatttcc |
6229216 |
T |
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| Q |
111 |
aataatcccttcagtattcctcctagttttgtatgtgatgttagtatatgtcaattcatataatcaagtgataagtgaaagtccacatggaataaaatta |
210 |
Q |
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| T |
6229215 |
aataatcccttcattattcctcctggtt---tgtgtgatgctagtatatgtcaattcatatgatcaagtgataagtgaaagtccacatggaataaaatta |
6229119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 202 - 378
Target Start/End: Complemental strand, 6228254 - 6228079
Alignment:
| Q |
202 |
ataaaattatttaaactttgtggtaagaaaaaccaaaatacaaatgcaaaacttcatttgcaacattttattactaaactacataatactgctgaaattc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| |
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| T |
6228254 |
ataaaattatttaaactttgtggtaagaaaaaccaaaaaacaaatgcaaaacttcatttccaac-ttttattactaaattacataatactgctgaaatta |
6228156 |
T |
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| Q |
302 |
attttcagttcatagcaattttactgtaaatcttcatgcaccattgcgtacttcaaaaaagggttcatatagttata |
378 |
Q |
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|||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
6228155 |
attttcagttcatagcaattttactgcaaattttcatgaaccattgtgtacttcaaaaaagggttcatatagttata |
6228079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 7423294 - 7423459
Alignment:
| Q |
11 |
cagagagcttaatttgcttatgtttctagggagaaagctgaattcttctattcatggttcactttcgtattttgagccactcaaccttcatgatctttcc |
110 |
Q |
| |
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|||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
7423294 |
cagagagcttaatttgcttaagtttcaagggtaaaagctgaattcttctattcatggttcactctcgttttttgagccactcaaccttcttgatctttcc |
7423393 |
T |
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| Q |
111 |
aataatcccttcagtattcctcctagttttgtatgtgatgttagtatatgtcaattcatataatcaa |
177 |
Q |
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| T |
7423394 |
aataatcccttcattattccttcta-ctttgtgtgtgatgccagtatatgtcaattcatatgatcaa |
7423459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 29303520 - 29303559
Alignment:
| Q |
179 |
tgataagtgaaagtccacatggaataaaattatttaaact |
218 |
Q |
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| T |
29303520 |
tgataagtgaaagtccacatagaatgaaattatttaaact |
29303559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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