View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_high_30 (Length: 395)
Name: NF4267_high_30
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 379
Target Start/End: Complemental strand, 42154997 - 42154651
Alignment:
| Q |
14 |
gaatagaaaaggtatgctagagtatttgattcttccaagctctatttatgagataaattacaatacctttataattactcgatacttggtatttttctat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
42154997 |
gaatagaaaaggtatgctagagtatttgat-cttccaagctctatttatgagataaattacaatacctttataattacttgatacttagtatttttctat |
42154899 |
T |
|
| Q |
114 |
ctttagcaattcaattggtcttgtctaaatatcatagtcaattcaaggtgcacaaattttcttcttttgtaa--ttta-taaccaaaaatatgaaatggt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||| |||||| |
|
|
| T |
42154898 |
ctttagcaattcaattggtcttgtctaaatatcatagtcaattcaaggtgcacaaattttcttctttttaaaagttcacaaaccaaaaatatg-aatggt |
42154800 |
T |
|
| Q |
211 |
gtcaatctttactagtccattataatttataaccatactcagaagattaattaataccttatataggtgattacttatttgtaattactatagtactatt |
310 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42154799 |
gtcaatcttttctagcccattataatttataaccatactcagaagattaattaataccttatataggtgattacttatttgtaatta------------- |
42154713 |
T |
|
| Q |
311 |
atgcatcactaataacaaaattgactaaaggaaattcttgaagattgaaagggaatagga-taccttgtt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42154712 |
--------ctaataacaaaattgactaaaggaaattcttgaagattgaaagggaataggattaccttgtt |
42154651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University