View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_31 (Length: 394)
Name: NF4267_high_31
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 32695787 - 32696161
Alignment:
| Q |
17 |
agttactatggttatggttatgga------gatgatgatgatgacaagtaccctgatttgactcacacactttttgattctgaaggattggattttgctg |
110 |
Q |
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| T |
32695787 |
agttactatggttatggttatggagatgatgatgatgatgatgacaagtaccctgatttgactcacacactttttgattctgaaggattggattttgctg |
32695886 |
T |
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| Q |
111 |
ggtcagtgattgataaggtgaagaattgtaaggaagaagcagggaaagaatttaaacttgaggatgatattgatgaagttgctgatctttttattagaag |
210 |
Q |
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| T |
32695887 |
ggtcagtgattgataaggtgaagaattgtaaggaagaagcagggaaagaatttaaacttgaggatgatattgatgaagttgctgatctttttattaggag |
32695986 |
T |
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| Q |
211 |
gtttaaaaggaatataatcttgcagaaacaagattcattgaagaggaagagggaaatggtgcagaagggtacttgaatttcaagtttgatcttgattcaa |
310 |
Q |
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| T |
32695987 |
gtttaaaaggaatataatcttgcaaaaacaagattcattgaagaggaagagggaaatggtccaaaagggtgcttgaatttcaagtttgatcttgattcaa |
32696086 |
T |
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| Q |
311 |
tggctctatattgctgcacaggatccaaactcgtcctgatacacgaaagctcaacctcatcattctctccctttg |
385 |
Q |
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| T |
32696087 |
tggctctatattgctgcacaggatccaaactcgtcctgatacacgaaagctcaacctcatcattctctccctttg |
32696161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 32679718 - 32679976
Alignment:
| Q |
29 |
tatggttatggagatgatgatgatgacaagtaccctgatttgactcacacactttttgattctgaaggattggattttgctgggtcagtgattgataagg |
128 |
Q |
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| T |
32679718 |
tatggttatggagatgatgatgg---caagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattgataagg |
32679814 |
T |
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| Q |
129 |
tgaagaattgtaaggaagaagcagggaaagaatttaaacttgaggatgatattgatgaagttgctgatctttttattagaaggtttaaaaggaatataat |
228 |
Q |
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|||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
32679815 |
tgaagatttgcaaggaagaagcagggaaagagtttaaacttgaggatgatattgatgaagttgccgatctttttattaggaggtttaaaagaaatataat |
32679914 |
T |
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| Q |
229 |
cttgcagaaacaagattcattgaagaggaagagggaaatggtgcagaagggtacttgaattt |
290 |
Q |
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| T |
32679915 |
tttgcaaaaacaagattcattgaggaggaggagggaaaccgtgcaaaagggtacttaaattt |
32679976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 82 - 290
Target Start/End: Original strand, 32686758 - 32686966
Alignment:
| Q |
82 |
ttttgattctgaaggattggattttgctgggtcagtgattgataaggtgaagaattgtaaggaagaagcagggaaagaatttaaacttgaggatgatatt |
181 |
Q |
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| T |
32686758 |
ttttggttctcagggattggattttgacggatcggtgattgataaggtgaagaattgtaaggaagaagcagggaaagaatttaaacttgaggatgatatt |
32686857 |
T |
|
| Q |
182 |
gatgaagttgctgatctttttattagaaggtttaaaaggaatataatcttgcagaaacaagattcattgaagaggaagagggaaatggtgcagaagggta |
281 |
Q |
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| T |
32686858 |
gatgaagttgctgatctttttattaggaggtttaaaaggaatataatcttgcaaaaacaagattcattgaagaggaagagggaaatggtccaaaagggtg |
32686957 |
T |
|
| Q |
282 |
cttgaattt |
290 |
Q |
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| T |
32686958 |
cttgaattt |
32686966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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