View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_33 (Length: 367)
Name: NF4267_high_33
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 2923855 - 2924212
Alignment:
| Q |
1 |
ttatccttttatcaaacctatacgaaaagagcaaaaggacacatcaaatgagacaaactatatgacaatgtaccaacggaacaagttgaaaataataaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2923855 |
ttatccttttatcaaacctatacgaaaagagcaaaaggacacatcaaatgagacaaactatatgacaatgtaccaacggaacaagttgaaaataataaaa |
2923954 |
T |
|
| Q |
101 |
atcaacaatgtatcctcacatgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2923955 |
atcaacaatgtatcctcacatgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcc |
2924054 |
T |
|
| Q |
201 |
tcgttgacgaagtcatgaagtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcactta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2924055 |
tcgttgacgaagtcatgaagtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcgctta |
2924154 |
T |
|
| Q |
301 |
cagcaggcaaattcgctctctcgaagcagtcaataaccgttcttctaatcttctgtgc |
358 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2924155 |
catcaggcaaattcgctctctcgaagcagtcaataaccgttcttctaatcttctgtgc |
2924212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 115 - 358
Target Start/End: Complemental strand, 36126915 - 36126672
Alignment:
| Q |
115 |
ctcacatgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtc |
214 |
Q |
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||||||||||||| |||||| ||||||| |||| || || ||||| ||||||||||| |||||||| ||||| | ||| |||||||| |||| || || |
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| T |
36126915 |
ctcacatgctcaagatatgacctccagcctccaagagcgtgattttaactaaatcttttaccccagggtataatttgaccaaatcctcactgacaaaatc |
36126816 |
T |
|
| Q |
215 |
atgaagtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattc |
314 |
Q |
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|||||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| | ||||| ||||| ||| ||||||| | |
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| T |
36126815 |
atgaagtgcggctgcaaactctactccagttggaccacctccaacaatagcaaaatgaagaattctctttctctcttcatcactcacactaggcaaactt |
36126716 |
T |
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| Q |
315 |
gctctctcgaagcagtcaataaccgttcttctaatcttctgtgc |
358 |
Q |
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|||||||| |||| |||||| || |||||||||||||| ||||| |
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| T |
36126715 |
gctctctcaaagctgtcaattacagttcttctaatcttttgtgc |
36126672 |
T |
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