View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_high_34 (Length: 367)

Name: NF4267_high_34
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_high_34
NF4267_high_34
[»] chr1 (7 HSPs)
chr1 (118-352)||(35214928-35215151)
chr1 (228-311)||(32800291-32800375)
chr1 (116-161)||(35218479-35218526)
chr1 (224-311)||(23485671-23485759)
chr1 (224-336)||(22679338-22679451)
chr1 (1-34)||(35214814-35214847)
chr1 (248-311)||(21537617-21537681)
[»] chr5 (10 HSPs)
chr5 (224-349)||(38900224-38900349)
chr5 (224-349)||(29673292-29673417)
chr5 (225-311)||(22297764-22297851)
chr5 (278-348)||(8086667-8086737)
chr5 (217-311)||(17047849-17047944)
chr5 (248-349)||(38298719-38298821)
chr5 (224-336)||(6843083-6843196)
chr5 (225-311)||(22297929-22298016)
chr5 (218-274)||(2858405-2858461)
chr5 (226-327)||(13657552-13657654)
[»] chr4 (7 HSPs)
chr4 (231-352)||(17431086-17431208)
chr4 (224-311)||(54164633-54164721)
chr4 (222-291)||(13552849-13552919)
chr4 (224-311)||(28687628-28687715)
chr4 (244-352)||(17168404-17168512)
chr4 (224-276)||(33752736-33752788)
chr4 (224-291)||(54164467-54164535)
[»] chr8 (5 HSPs)
chr8 (224-315)||(31212314-31212406)
chr8 (224-311)||(9861569-9861657)
chr8 (224-336)||(10070001-10070114)
chr8 (213-349)||(14148386-14148522)
chr8 (224-327)||(33892037-33892141)
[»] chr7 (10 HSPs)
chr7 (223-349)||(20164619-20164746)
chr7 (224-346)||(29635236-29635358)
chr7 (224-287)||(31198488-31198552)
chr7 (222-291)||(9686472-9686542)
chr7 (248-349)||(29635632-29635734)
chr7 (226-337)||(7760738-7760850)
chr7 (226-312)||(31172341-31172428)
chr7 (224-310)||(31172177-31172263)
chr7 (249-345)||(35303880-35303977)
chr7 (248-311)||(23797211-23797275)
[»] chr6 (9 HSPs)
chr6 (248-349)||(6190594-6190695)
chr6 (248-352)||(30519705-30519810)
chr6 (224-273)||(31298930-31298979)
chr6 (224-316)||(13340605-13340698)
chr6 (222-311)||(24704306-24704396)
chr6 (225-274)||(13340445-13340494)
chr6 (224-313)||(34637426-34637515)
chr6 (211-311)||(34637591-34637692)
chr6 (248-311)||(24704749-24704813)
[»] chr2 (8 HSPs)
chr2 (222-327)||(980918-981022)
chr2 (224-327)||(4921314-4921418)
chr2 (226-311)||(981084-981169)
chr2 (224-276)||(16192616-16192668)
chr2 (224-311)||(20972389-20972477)
chr2 (225-311)||(16127920-16128007)
chr2 (224-291)||(30714124-30714191)
chr2 (224-311)||(32945613-32945701)
[»] scaffold0042 (1 HSPs)
scaffold0042 (234-349)||(30687-30802)
[»] chr3 (3 HSPs)
chr3 (241-327)||(44094293-44094380)
chr3 (224-311)||(32618953-32619041)
chr3 (224-327)||(28725662-28725768)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 118 - 352
Target Start/End: Original strand, 35214928 - 35215151
Alignment:
Q  118 atgcatatattttatacaccattttgatagcggaacgtgtgcaatgttaaaaaacttgcaaactcatattttagtatttatttatgccacttcttaatat 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35214928 atgcatatcttttatacaccattttgatagcggaacgtgtgcaatgttaaaaaacttgcaaactcatattttagtatttatttatgccacttcttaacat 35215027  T
Q  218 tattaaggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaaaattta 317  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||           ||||||||| |||||||||||||||||    
T  35215028 tattagggttaaataagtaattagtccctctaaatataccaatatttgatcttaatcccata-----------aaatatttgatccctctaaaaaattta 35215116  T
Q  318 atccatgaaactaatccctactttttagtcaattc 352  Q
    |||||||||| |||||| |||||||||||||||||    
T  35215117 atccatgaaattaatccttactttttagtcaattc 35215151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 32800375 - 32800291
Alignment:
Q  228 aaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||| |||||||  |||||||||||||||||||| ||| | ||||||||||||| | ||  | ||||||||||||||||    
T  32800375 aaataagtaaatagtcccactaaatatatcaatatttgattttaatcctcataaaatattatgtaggtttttggtccctctaaaa 32800291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 35218479 - 35218526
Alignment:
Q  116 atatgcatatat--tttatacaccattttgatagcggaacgtgtgcaa 161  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  35218479 atatgcatatatcttttatacaccattttgatagcagaacgtgtgcaa 35218526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 23485671 - 23485759
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcat--aaaatattttttaaatatttggtccctctaaaa 311  Q
    |||| ||||||||| ||||| |  ||||||||| |||||||||| |||||| |||  |||||  ||||||||| ||||||||||||||||    
T  23485671 ggttgaataagtaaatagtctccctaaatatattaatatttgattttagtc-catttaaaatgctttttaaatttttggtccctctaaaa 23485759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 336
Target Start/End: Original strand, 22679338 - 22679451
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaaaatttaatcca 322  Q
    |||||||||||||| |||||||| | |||||||||| || |||| ||| | | | ||||||||  ||||  | ||| ||||||| ||||||||| |||||    
T  22679338 ggttaaataagtaaatagtccctctgaatatatcaacatatgattttaatccccctaaaatatcctttaggttttttgtccctccaaaaaatttcatcca 22679437  T
Q  323 tgaaactaatccct 336  Q
    ||||| || |||||    
T  22679438 tgaaattagtccct 22679451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35214814 - 35214847
Alignment:
Q  1 atacacaacaacttcaatttcgaggtggctcatt 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  35214814 atacacaacaacttcaatttcgaggtgactcatt 35214847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 21537617 - 21537681
Alignment:
Q  248 taaatatatcaatatttgatcttagtc-tcataaaatattttttaaatatttggtccctctaaaa 311  Q
    ||||||||||||||||| || ||| || || |||||||||||| || | ||||||||||||||||    
T  21537617 taaatatatcaatatttaattttaatcctcttaaaatatttttaaagtttttggtccctctaaaa 21537681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 38900224 - 38900349
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaaaatttaatccat 323  Q
    |||||||||||||| |  ||||| |||||||| |||||||| || |||||||| ||||||||||||||    |||||| || | ||||||||| || |||    
T  38900224 ggttaaataagtaaattttccctctaaatataccaatattttattttagtctcctaaaatattttttatgcttttggttccaccaaaaaatttcattcat 38900323  T
Q  324 gaaactaatccctactttttagtcaa 349  Q
    |||| ||||| |||||||||||||||    
T  38900324 gaaattaatctctactttttagtcaa 38900349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 29673292 - 29673417
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaaaatttaatcca 322  Q
    |||||||||||||| | ||||| ||||||||| ||| ||||||| ||||| ||| ||||||||||||   || |||| |||||||||||||||| | |||    
T  29673292 ggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatatttttaggat-tttgttccctctaaaaaatttcaacca 29673390  T
Q  323 tgaaactaatccctactttttagtcaa 349  Q
    | ||| || ||||||||||||| ||||    
T  29673391 taaaattagtccctactttttaatcaa 29673417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 22297764 - 22297851
Alignment:
Q  225 gttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc-ataaaatattttttaaatatttggtccctctaaaa 311  Q
    ||||||||||||| |||||||| |||||||||||| ||||||| |||||| |  ||||||||||||||  | |||||||||| |||||    
T  22297764 gttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccctttaaaa 22297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 8086737 - 8086667
Alignment:
Q  278 taaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaactaatccctactttttagtca 348  Q
    |||||||||||||| || ||||||||||| ||||  ||| |||||||||| |||||| |||||||||||||    
T  8086737 taaaatattttttagatttttggtccctcaaaaagttttcatccatgaaattaatccatactttttagtca 8086667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 17047849 - 17047944
Alignment:
Q  217 ttattaaggttaaataagtaattagtccctttaaatatatcaatatttgatcttag-tctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||| |||| |||||| |||| ||||| || |||||||| ||||||||||| ||||  ||| ||||||||| ||||||  ||||||||||||||||    
T  17047849 ttatgaaggctaaatatgtaaatagtctctctaaatataccaatatttgattttagccctcctaaaatattctttaaacttttggtccctctaaaa 17047944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 38298719 - 38298821
Alignment:
Q  248 taaatatatcaatatttgatcttagtctca-taaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaactaatccctactttttagt 346  Q
    |||||||||||||||||||| | |||| |  ||||||||| ||||  | ||| ||| |||||||||| || ||| |||||| |||||||||||||||| |    
T  38298719 taaatatatcaatatttgatttaagtccctctaaaatattctttaggttttttgtctctctaaaaaaattcatctatgaaaataatccctactttttatt 38298818  T
Q  347 caa 349  Q
    |||    
T  38298819 caa 38298821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 336
Target Start/End: Original strand, 6843083 - 6843196
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaaaatttaatcca 322  Q
    |||||||||| ||| ||||| |||||||||||  || ||||||| ||||| ||| || ||||||  ||| || ||||||||||||||||  ||| ||| |    
T  6843083 ggttaaataaataaatagtctctttaaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaaaatttttcatcta 6843182  T
Q  323 tgaaactaatccct 336  Q
    ||||| ||||||||    
T  6843183 tgaaattaatccct 6843196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 22298016 - 22297929
Alignment:
Q  225 gttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcat-aaaatattttttaaatatttggtccctctaaaa 311  Q
    ||||||||||||| | |||||  ||||||||  || ||||||| |||||| | | |||||||||||||| | ||||||||||||||||    
T  22298016 gttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatattttttaagtttttggtccctctaaaa 22297929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 2858405 - 2858461
Alignment:
Q  218 tattaaggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtc 274  Q
    |||| ||||||||||||||| | |||||  |||||||||||| ||||||| ||||||    
T  2858405 tatttaggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtc 2858461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 13657552 - 13657654
Alignment:
Q  226 ttaaataagtaattagtccctttaaatatatcaatatttgatcttagt--ctcataaaatattttttaaatatttggtccctctaaaaaatttaatccat 323  Q
    |||||||| ||| | |||||||||||||||  || ||||||| |||||  ||| ||||||||| |||| |  ||||||| ||||||||||||| ||| ||    
T  13657552 ttaaataaataaatggtccctttaaatatacaaacatttgattttagttcctc-taaaatattctttagacttttggtctctctaaaaaatttcatctat 13657650  T
Q  324 gaaa 327  Q
    ||||    
T  13657651 gaaa 13657654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 352
Target Start/End: Complemental strand, 17431208 - 17431086
Alignment:
Q  231 taagtaattagtccctttaaatatatcaatatttgatcttagtctca-taaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaact 329  Q
    ||||||| | |||| | |||||||||||| ||||||| |||||| |  ||||||||||||||    ||||||||||| ||||| ||| |||||||||| |    
T  17431208 taagtaaatggtccatctaaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctccaaaaattttcatccatgaaatt 17431109  T
Q  330 aatccctactttttagtcaattc 352  Q
    ||||||||||||||||| |||||    
T  17431108 aatccctactttttagttaattc 17431086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 54164721 - 54164633
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc-ataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||||| ||||| |  |||||||| ||| ||||||| |||||||| |||||||||||||||  | || |||||||||||||    
T  54164721 ggttaaataagtaaatagtctccctaaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaaaa 54164633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 13552919 - 13552849
Alignment:
Q  222 aaggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatatttttta 291  Q
    |||||||||||||||| ||||||   |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  13552919 aaggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattattta 13552849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 28687715 - 28687628
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt--ctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||||| |||| | |||||||||||||| ||||||| |||||  ||| ||||||||||||||    ||||||||||||||||    
T  28687715 ggttaaataagtaaatagttc-tttaaatatatcaacatttgattttagttactc-taaaatattttttagggttttggtccctctaaaa 28687628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 17168404 - 17168512
Alignment:
Q  244 cctttaaatatatcaatatttgatcttagtc-tcataaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaactaatccctactttt 342  Q
    ||||||||||||||||||||| || |||||| || ||||| |||| |||  | ||||||| || |||||| ||| ||| |||||| ||||   |||||||    
T  17168404 cctttaaatatatcaatatttaattttagtcttcttaaaacatttcttagct-tttggtctctttaaaaattttcatcaatgaaattaatttttactttt 17168502  T
Q  343 tagtcaattc 352  Q
    ||||||||||    
T  17168503 tagtcaattc 17168512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 33752788 - 33752736
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc 276  Q
    ||||||||||||||   |||| |||||||||||||| ||||||| ||||||||    
T  33752788 ggttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctc 33752736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 54164467 - 54164535
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatatttttta 291  Q
    |||||||||||||| |||||  | |||||||| ||| ||||||| ||||| |||||||||||| |||||    
T  54164467 ggttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcctcataaaatatatttta 54164535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 315
Target Start/End: Original strand, 31212314 - 31212406
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaaaatt 315  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||| ||||| | ||||||||||| ||||    ||||||||||||||||||||    
T  31212314 ggttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatattctttaggcttttggtccctctaaaaaatt 31212406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 9861569 - 9861657
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc-ataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||||| ||||||   |||||||||||| ||||||| |||||| | |||||||||| ||||    ||||||||||||||||    
T  9861569 ggttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccctataaaatattctttaggcttttggtccctctaaaa 9861657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 10070114 - 10070001
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtc-tcataaaatattttttaaatatttggtccctctaaaaaatttaatcca 322  Q
    ||||||||||| || |||| ||  |||||||| |||||||| || ||| || || ||||||||||||||  | ||||||||||||||||  ||| ||| |    
T  10070114 ggttaaataagcaaatagttcccctaaatataccaatattttattttaatcctcctaaaatattttttaggtttttggtccctctaaaatttttcatcta 10070015  T
Q  323 tgaaactaatccct 336  Q
    ||||| || |||||    
T  10070014 tgaaattagtccct 10070001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 349
Target Start/End: Original strand, 14148386 - 14148522
Alignment:
Q  213 aatattattaaggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    ||||| |||| |||| ||||||||| | |||||  |||||||||||| ||||||| ||||| ||| |||||||||| |||  | ||| || || ||||||    
T  14148386 aatataattagggtttaataagtaagtggtccccctaaatatatcaacatttgattttagtcctcctaaaatatttcttaggtttttagttcc-ctaaaa 14148484  T
Q  312 aatttaatccatgaaactaatccctactttttagtcaa 349  Q
    | ||| ||| |||||| || ||| || |||||||||||    
T  14148485 attttcatctatgaaattagtccatattttttagtcaa 14148522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 33892037 - 33892141
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcat-aaaatattttttaaatatttggtccctctaaaaaatttaatcca 322  Q
    |||||||||||||| |||| |  ||||||||| ||| ||||||| |||||| | | |||||||| ||||  | |||||||| |||||||| ||| ||| |    
T  33892037 ggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaaaaattttcatcta 33892136  T
Q  323 tgaaa 327  Q
    |||||    
T  33892137 tgaaa 33892141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 349
Target Start/End: Original strand, 20164619 - 20164746
Alignment:
Q  223 aggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtc-tcataaaatattttttaaatatttggtccctctaaaaaatttaatcc 321  Q
    ||||||||||||||| | ||||| | ||||||| ||| ||||||| |||||| |  |||||| ||  |||| | ||||||||||| ||||  ||| || |    
T  20164619 aggttaaataagtaaatggtcccctaaaatataccaacatttgattttagtcattttaaaattttccttaagtttttggtccctccaaaatttttcattc 20164718  T
Q  322 atgaaactaatccctactttttagtcaa 349  Q
    |||||| |||||||||||||||||||||    
T  20164719 atgaaattaatccctactttttagtcaa 20164746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 29635236 - 29635358
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaaaatttaatccat 323  Q
    |||||||||||||| | |||||  |||||||||||| ||||||| |||||| | |||||||||  ||| |  ||||||||||||||||  ||| || |||    
T  29635236 ggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcccctaaaatattccttagacttttggtccctctaaaatttttcatacat 29635335  T
Q  324 gaaactaatccctactttttagt 346  Q
    | || || |||||| ||||||||    
T  29635336 gtaattagtccctattttttagt 29635358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 31198552 - 31198488
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttag-tctcataaaatattt 287  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||| |||| |||| ||||||||||    
T  31198552 ggttaaataagtaaatagtccctttaaatataccaacatttgattttagttctcctaaaatattt 31198488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 9686542 - 9686472
Alignment:
Q  222 aaggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatatttttta 291  Q
    |||||||||||||||| ||||||   |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  9686542 aaggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattattta 9686472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 29635734 - 29635632
Alignment:
Q  248 taaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaactaatccctactttttagt 346  Q
    |||||||||||| ||||||| ||||| ||| |||||||||||||||   ||||||||||| |||   ||  |||||| ||| || |||||||||||||||    
T  29635734 taaatatatcaacatttgattttagttctcctaaaatattttttaagattttggtccctccaaagttttacatccataaaattagtccctactttttagt 29635635  T
Q  347 caa 349  Q
    |||    
T  29635634 caa 29635632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 7760850 - 7760738
Alignment:
Q  226 ttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc-ataaaatattttttaaatatttggtccctctaaaaaatttaatccatg 324  Q
    |||||||||||| |||| ||  |||||||| ||| ||||||| |||||| | ||||||||||| |||    ||||||||||| ||||| ||| |||||||    
T  7760850 ttaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctccaaaaattttcatccatg 7760751  T
Q  325 aaactaatcccta 337  Q
    ||| || ||||||    
T  7760750 aaattagtcccta 7760738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 31172428 - 31172341
Alignment:
Q  226 ttaaataagtaattagtccctttaaatatatcaatatttgatcttagtc-tcataaaatattttttaaatatttggtccctctaaaaa 312  Q
    |||||||||||| |  ||||||||||||||  || ||||||| ||| || || ||||||||||||||  | |||||||||||||||||    
T  31172428 ttaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaaaaa 31172341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 31172177 - 31172263
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaa 310  Q
    |||||||||| ||| ||| | ||| ||||||||||| ||||||| ||| ||  ||||||||||||||| |  |||| ||||||||||    
T  31172177 ggttaaataaataaatagcctcttcaaatatatcaacatttgattttactcctataaaatattttttagacttttgatccctctaaa 31172263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 35303880 - 35303977
Alignment:
Q  249 aaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaactaatccctactttttag 345  Q
    |||||||||||||||| || ||||| | | | |||||||||| |  | ||||||||||||||||  || ||||||||||| || ||| ||||||||||    
T  35303880 aaatatatcaatatttaattttagttccccttaaatatttttgaggtttttggtccctctaaaactttcaatccatgaaattagtccgtactttttag 35303977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 23797275 - 23797211
Alignment:
Q  248 taaatatatcaatatttgatcttagtctca-taaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||| ||||||| |||||| |  |||||||||| ||| || ||||||||||||||||    
T  23797275 taaatatatcaacatttgattttagtccctctaaaatatttcttagatttttggtccctctaaaa 23797211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 6190594 - 6190695
Alignment:
Q  248 taaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaactaatccctactttttagtc 347  Q
    |||||||||||| ||||||| |||||||| | |||||||| |||  | |||||||  |  ||||||||| |||||||||| ||||| |||||||||| ||    
T  6190594 taaatatatcaacatttgattttagtctccttaaatatttcttaggtttttggtcttttcaaaaaattttatccatgaaattaatcactactttttaatc 6190693  T
Q  348 aa 349  Q
    ||    
T  6190694 aa 6190695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 30519705 - 30519810
Alignment:
Q  248 taaatatatcaatatttgatcttagtctcat-aaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaactaatccctactttttagt 346  Q
    |||||||| ||| ||||||| ||| |||| | |||||||| ||||| | ||||||||||||||||  ||| |||||||||| || ||| ||| |||||||    
T  30519705 taaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaaaatttttcatccatgaaattagtccatacattttagt 30519804  T
Q  347 caattc 352  Q
    ||||||    
T  30519805 caattc 30519810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 31298979 - 31298930
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt 273  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  31298979 ggttaaataagtaaatagtccctttaaatataccaatatttgattttagt 31298930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 13340698 - 13340605
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc-ataaaatattttttaaatatttggtccctctaaaaaattt 316  Q
    ||||||||| | || ||||||| |||||||||  || ||||||| |||||| | |||||||||| ||||  | |||||||||||||||||||||    
T  13340698 ggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaaaaaattt 13340605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 24704306 - 24704396
Alignment:
Q  222 aaggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtct-cataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||| ||||||||| | || ||| |||||||| ||||||||||| ||||||| | ||||||||| ||||    ||||||||||||||||    
T  24704306 aaggttgaataagtaaatggttcctctaaatataccaatatttgattttagtctccctaaaatattatttatgcttttggtccctctaaaa 24704396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 13340445 - 13340494
Alignment:
Q  225 gttaaataagtaattagtccctttaaatatatcaatatttgatcttagtc 274  Q
    ||||||||||||| ||||||| ||||||||| ||| ||||||| ||||||    
T  13340445 gttaaataagtaaatagtccccttaaatataccaacatttgattttagtc 13340494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 313
Target Start/End: Original strand, 34637426 - 34637515
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaaaa 313  Q
    |||||||||||||| ||||| |  |||||||| ||| ||||||| |||||| | ||||||||| || | |  |||||||||| |||||||    
T  34637426 ggttaaataagtaaatagtctccataaatataccaacatttgattttagtcccctaaaatattcttgagacttttggtccctttaaaaaa 34637515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 34637692 - 34637591
Alignment:
Q  211 ttaatattattaaggttaaataagtaattagtccctttaaatatatcaatatttgatcttag-tctcataaaatattttttaaatatttggtccctctaa 309  Q
    ||||| || ||| |||||||||||||| ||||| |  |||||||||||| ||||||| |||| || | ||||||||| || |  | ||||||||||||||    
T  34637692 ttaatgtttttagggttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaa 34637593  T
Q  310 aa 311  Q
    ||    
T  34637592 aa 34637591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 24704813 - 24704749
Alignment:
Q  248 taaatatatcaatatttgatcttag-tctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||||||||||| |||| || | ||||||||| ||||||| ||| ||||||| ||||    
T  24704813 taaatatatcaatatttgattttagttcccctaaaatattctttaaatttttagtccctccaaaa 24704749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 980918 - 981022
Alignment:
Q  222 aaggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaaaatttaatcc 321  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||| ||||||   |||||||||| |||    ||||||||| ||||||||||| |||     
T  980918 aaggttaaataagtaaatgatccctttaaatatatcaacatttgattttagtcctctaaaatatttcttaggcttttggtccc-ctaaaaaattttatct 981016  T
Q  322 atgaaa 327  Q
    ||||||    
T  981017 atgaaa 981022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 4921418 - 4921314
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcat-aaaatattttttaaatatttggtccctctaaaaaatttaatcca 322  Q
    |||||||||| ||| ||||| || |||||||||||| ||||||| ||| || | | ||||||||||||| || ||| ||||||||||||| ||| ||| |    
T  4921418 ggttaaataaataaatagtctctctaaatatatcaacatttgattttaatccccttaaaatattttttagattttttgtccctctaaaaattttcatcta 4921319  T
Q  323 tgaaa 327  Q
    |||||    
T  4921318 tgaaa 4921314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 981169 - 981084
Alignment:
Q  226 ttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||| ||||| || |||||||| ||| ||||||| |||||| | ||||||||| ||||    ||||||||||||||||    
T  981169 ttaaataagtaaatagtctctctaaatataccaacatttgattttagtcccctaaaatattctttaggcttttggtccctctaaaa 981084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 16192668 - 16192616
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc 276  Q
    |||||||||||||| ||||||  ||||||||||||| ||||||| ||||||||    
T  16192668 ggttaaataagtaaatagtcctcttaaatatatcaacatttgattttagtctc 16192616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 20972477 - 20972389
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||| | | ||||||||||||||||||| ||||||| ||||| | || ||||||||| |||  | ||||||||| ||||||    
T  20972477 ggttaaataagtgaatggtccctttaaatatatcaacatttgattttagtccccaaaaaatatttcttaggtttttggtcccgctaaaa 20972389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 16127920 - 16128007
Alignment:
Q  225 gttaaataagtaattagtccctttaaatatatcaatatttgatcttagt-ctcataaaatattttttaaatatttggtccctctaaaa 311  Q
    ||||||||||||| ||||||| ||||||||| ||| |||| || ||||| ||| ||||||||| | ||  | ||||||||||||||||    
T  16127920 gttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaaaa 16128007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 30714124 - 30714191
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtc-tcataaaatatttttta 291  Q
    ||||||||| |||| | ||||| ||||||||||||| ||||||| |||||| || ||||||||||||||    
T  30714124 ggttaaata-gtaaatggtccccttaaatatatcaacatttgattttagtcttcttaaaatatttttta 30714191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 32945613 - 32945701
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtctc-ataaaatattttttaaatatttggtccctctaaaa 311  Q
    ||||||||| |||| |||||||   ||||||| ||| ||||||| |||||| | |||||||||| |||| || |||| |||||||||||    
T  32945613 ggttaaataggtaaatagtcccccaaaatataccaacatttgattttagtccccataaaatattatttagatttttgatccctctaaaa 32945701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 30802 - 30687
Alignment:
Q  234 gtaattagtccctttaaatatatcaatatttgatcttagtctcataaaa-tattttttaaatatttggtccctctaaaaaatttaatccatgaaactaat 332  Q
    |||| ||||| | |||||||||  || ||||||| |||||||| ||||| |||| ||||| | |||||||| |||||||| ||| |||||| ||| || |    
T  30802 gtaaatagtctccttaaatataataacatttgattttagtctcctaaaaatattatttaagtttttggtcc-tctaaaaattttcatccatcaaattagt 30704  T
Q  333 ccctactttttagtcaa 349  Q
    |||||||||||||||||    
T  30703 ccctactttttagtcaa 30687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 327
Target Start/End: Complemental strand, 44094380 - 44094293
Alignment:
Q  241 gtccctttaaatatatcaatatttgatcttagtctcat-aaaatattttttaaatatttggtccctctaaaaaatttaatccatgaaa 327  Q
    ||||| ||||||||||||| ||||||| |||||||| | ||||||||| |||    ||||||||||| ||||||||| ||||||||||    
T  44094380 gtccccttaaatatatcaacatttgattttagtctcctgaaaatatttcttagggttttggtccctccaaaaaattttatccatgaaa 44094293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 32619041 - 32618953
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatatcaatatttgatcttagtc-tcataaaatattttttaaatatttggtccctctaaaa 311  Q
    |||||||||||||| |||| | | |||||||||||| ||||||| |||||| |  |||||||||||||| || ||| || |||||||||    
T  32619041 ggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctctaaaa 32618953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 28725768 - 28725662
Alignment:
Q  224 ggttaaataagtaattagtccctttaaatatat---caatatttgatcttagtctcataaaatattttttaaatatttggtccctctaaaaaatttaatc 320  Q
    |||||||||||||| | |||||  ||||||||    ||| ||||||| ||||||||  ||||||||  |||  | ||||||||||| ||||||||| |||    
T  28725768 ggttaaataagtaaatggtccccctaaatataataccaacatttgattttagtctcccaaaatattcattaggtttttggtccctccaaaaaatttcatc 28725669  T
Q  321 catgaaa 327  Q
    |||||||    
T  28725668 catgaaa 28725662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University