View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_37 (Length: 348)
Name: NF4267_high_37
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_37 |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 15811494 - 15811160
Alignment:
| Q |
1 |
gaagtaggatttgatttgtcaaatggcatatcataaaacagattcatatctaacaacaatgaaattctgagtgtctaaatccaaagctttactttccaag |
100 |
Q |
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| T |
15811494 |
gaagtaggatttgatttgtcaaatggcatatcataaaacagattcatatctaacaacaatgaaattctgagtgtctaaatccaaagctttactttccaag |
15811395 |
T |
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| Q |
101 |
gggtcactgataagacattctcattacgcataacaaaatccaaacaagatcggtgaattagtcatatgtcgttttgaaacatgctaagtatcacacacta |
200 |
Q |
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| T |
15811394 |
gggtcactgataagacattctcattacgcataacaaactccaaacaagatcggtgaattagtcatatgtcgttttgaaacatgctaagtatcacacacta |
15811295 |
T |
|
| Q |
201 |
cacaaatagataatagaaataacactaaggacaataacttgcagagcaagtaatccctatagttcattttgtattgtactttccattagtgtagtacaac |
300 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
15811294 |
cacaaatagatgatagaaataacactaaggacaataacttgcagagcaagtaatctctatagttcattttgtattgtactttccatcagtgtagtagaac |
15811195 |
T |
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| Q |
301 |
ttgagtagtgtagtacaattagattagctatatat |
335 |
Q |
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| T |
15811194 |
ttgagtagtgtagtacaattagattagctatatat |
15811160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 167899 - 167754
Alignment:
| Q |
189 |
tatcacacactacacaaatagataatagaaataacactaaggacaataacttgcagagcaagtaatccctatagttcattttgtattgtactttccatta |
288 |
Q |
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| T |
167899 |
tatcacacactacacaaatagatgatagaaataacactaaggataataatttgcagtgcaagtaatctctataattcattt-gtattgtactttccatta |
167801 |
T |
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| Q |
289 |
gtgtagtacaacttgagtagtgtagtacaattagattagctatatat |
335 |
Q |
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| T |
167800 |
gtgtagtacaacttgtgtagtgtagtacaattagattagctatatat |
167754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 217 - 335
Target Start/End: Complemental strand, 2377 - 2260
Alignment:
| Q |
217 |
aaataacactaaggacaataacttgcagagcaagtaatccctatagttcattttgtattgtactttccattagtgtagtacaacttgagtagtgtagtac |
316 |
Q |
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||||||||||||||| |||||||||||| |||||||||| |||||||||| | |||||||||||||||||| | ||||||||||||||||||||| ||| |
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| T |
2377 |
aaataacactaaggataataacttgcagtgcaagtaatctctatagttcacat-gtattgtactttccattaatttagtacaacttgagtagtgtaatac |
2279 |
T |
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| Q |
317 |
aattagattagctatatat |
335 |
Q |
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||||||||||||||||||| |
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| T |
2278 |
aattagattagctatatat |
2260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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