View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_high_42 (Length: 333)
Name: NF4267_high_42
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_42 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 48702025 - 48702356
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
48702025 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
48702123 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48702124 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgca |
48702223 |
T |
|
| Q |
201 |
tttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttca |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702224 |
tttatggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttca |
48702323 |
T |
|
| Q |
301 |
acaaaagtggctttaccactttcctgtgttcac |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
48702324 |
acaaaagtggctttaccactttcctgtgttcac |
48702356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 48697336 - 48697667
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
48697336 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
48697434 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48697435 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgca |
48697534 |
T |
|
| Q |
201 |
tttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttca |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697535 |
tttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttca |
48697634 |
T |
|
| Q |
301 |
acaaaagtggctttaccactttcctgtgttcac |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
48697635 |
acaaaagtggctttaccactttcctgtgttcac |
48697667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 30945680 - 30946029
Alignment:
| Q |
1 |
cttataaataggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta---- |
94 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
30945680 |
cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaa |
30945779 |
T |
|
| Q |
95 |
-aacaagct---------ttactt-gttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtca |
183 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30945780 |
gaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcca |
30945879 |
T |
|
| Q |
184 |
tgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945880 |
tgccccaaccaattgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgc |
30945979 |
T |
|
| Q |
284 |
catgtgataacacttcaacaaaagtggctttaccactttcctgtgttcac |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945980 |
catgtgataacacttcaacaaaagtggctttaccactttcctgtgttcac |
30946029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 30950386 - 30950735
Alignment:
| Q |
1 |
cttataaataggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta---- |
94 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
30950386 |
cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaa |
30950485 |
T |
|
| Q |
95 |
-aacaagct---------ttactt-gttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtca |
183 |
Q |
| |
|
|||||| |||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30950486 |
gaacaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcca |
30950585 |
T |
|
| Q |
184 |
tgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950586 |
tgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgc |
30950685 |
T |
|
| Q |
284 |
catgtgataacacttcaacaaaagtggctttaccactttcctgtgttcac |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950686 |
catgtgataacacttcaacaaaagtggctttaccactttcctgtgttcac |
30950735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 24520229 - 24520363
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
24520229 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
24520327 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520328 |
ctttacttgttcttgtgttgttactgatttgggatg |
24520363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 42266016 - 42265883
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
42266016 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaag |
42265918 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265917 |
ctttacttgttcttgtgttgttactgatttgggat |
42265883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 42270735 - 42270602
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
42270735 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaag |
42270637 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270636 |
ctttacttgttcttgtgttgttactgatttgggat |
42270602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 10427371 - 10427315
Alignment:
| Q |
32 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
10427371 |
actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 5198859 - 5199190
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5198859 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
5198957 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5198958 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgca |
5199057 |
T |
|
| Q |
201 |
tttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttca |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199058 |
tttatggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttca |
5199157 |
T |
|
| Q |
301 |
acaaaagtggctttaccactttcctgtgttcac |
333 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
5199158 |
acaaaagtggctttaccactttcctatgttcac |
5199190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
| Q |
10 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
94 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
830205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
| Q |
10 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
94 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta |
825549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 34614229 - 34614301
Alignment:
| Q |
245 |
atgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaa-gtggctttac |
316 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
34614229 |
atgtaaacatagaaattacatgctaacatgttttactgccatgtgacaacaattcaacaaaaggtggctttac |
34614301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 15602986 - 15602905
Alignment:
| Q |
5 |
taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca |
86 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||||| || | || ||||||||||| ||||||||||| |||||| |
|
|
| T |
15602986 |
taaataggagaatactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 28715747 - 28715678
Alignment:
| Q |
139 |
tagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca |
209 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
28715747 |
tagaatggtgcaagag-catgctatttataggagtgaaagaaccatgccccaaccatttacatttatggca |
28715678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 30397135 - 30397191
Alignment:
| Q |
32 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||||||||||| || |||||||| |
|
|
| T |
30397135 |
actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 27878913 - 27879258
Alignment:
| Q |
1 |
cttataaataggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta---- |
94 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
27878913 |
cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaa |
27879012 |
T |
|
| Q |
95 |
-aacaagct---------ttactt-gttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtca |
183 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27879013 |
gaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcca |
27879112 |
T |
|
| Q |
184 |
tgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879113 |
tgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgc |
27879212 |
T |
|
| Q |
284 |
catgtgataacacttcaacaaaagtggctttaccactttcctgtgt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879213 |
catgtgataacacttcaacaaaagtggctttaccactttcctgtgt |
27879258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 26976335 - 26976470
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
26976335 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
26976433 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatga |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976434 |
ctttacttgttcttgtgttgttactgatttgggatga |
26976470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1234814 - 1234680
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
1234814 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
1234716 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234715 |
ctttacttgttcttgtgttgttactgatttgggatg |
1234680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 27874194 - 27874327
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
27874194 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaag |
27874292 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874293 |
ctttacttgttcttgtgttgttactgatttgggat |
27874327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 30986478 - 30986430
Alignment:
| Q |
156 |
catgctatttatactagtgaaagagtcatgccccaaccaattgcattta |
204 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
30986478 |
catgctatttatattagtgaaagagccatgccccaaccaattacattta |
30986430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 30966605 - 30966566
Alignment:
| Q |
156 |
catgctatttatactagtgaaagagtcatgccccaaccaa |
195 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30966605 |
catgctatttatactagtgaaagagccatgccccaaccaa |
30966566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 18967968 - 18967912
Alignment:
| Q |
32 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| |||| ||||||||| |||||||| |
|
|
| T |
18967968 |
actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 30966737 - 30966683
Alignment:
| Q |
33 |
ctaggagaaacctcacagg-agaaactaatt-tttctctctatattttttctctc |
85 |
Q |
| |
|
||||||||||||||||| | |||||||| || ||||||||||||||||||||||| |
|
|
| T |
30966737 |
ctaggagaaacctcacaagtagaaactatttctttctctctatattttttctctc |
30966683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 49 - 333
Target Start/End: Original strand, 2817502 - 2817787
Alignment:
| Q |
49 |
aggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtg |
148 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817502 |
aggagaaactatttttcctctctatattttttctctcattaccctaaacaagttttacttgttcttgtgttgttactgatttgggatgagtagaatggtg |
2817601 |
T |
|
| Q |
149 |
caagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgt |
248 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2817602 |
caagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaacttcccatgt |
2817701 |
T |
|
| Q |
249 |
gaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaagtggcttta-ccactttcctgtgttcac |
333 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2817702 |
gaacatagaaattacatgccaacatattttactgccatgtgataacaattcaacaaaagtggctttatgcactttcctgtgttcac |
2817787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 5818717 - 5818852
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5818717 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
5818815 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatga |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818816 |
ctttacttgttcttgtgttgttactgatttgggatga |
5818852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 5823479 - 5823613
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5823479 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
5823577 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823578 |
ctttacttgttcttgtgttgttactgatttgggatg |
5823613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 54545997 - 54545902
Alignment:
| Q |
1 |
cttataaataggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
94 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
54545997 |
cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
54545902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 24671245 - 24671301
Alignment:
| Q |
32 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
24671245 |
actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 4579177 - 4579126
Alignment:
| Q |
37 |
gagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
4579177 |
gagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 29585504 - 29585825
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
29585504 |
cttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaag |
29585603 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaaggg-acatgctatttatactagtgaaagagtcatgccccaaccaattgc |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||| ||| || ||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
29585604 |
ctttacttgttgttgtgttgttactgatttgggatgatgtg--tggaacaatggtaca----------aatagtgaaagagccatgccccaaccaattgc |
29585691 |
T |
|
| Q |
200 |
atttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29585692 |
atttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacataaaaactacatgccaacatgttttactgccatgtgataacaattc |
29585791 |
T |
|
| Q |
300 |
aacaaaagtggctttaccactttcctgtgttcac |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29585792 |
aacaaaagtggctttaccactttcctgtgttcac |
29585825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 41718523 - 41718357
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
41718523 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
41718425 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718424 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
41718357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 41723249 - 41723083
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
41723249 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
41723151 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723150 |
ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
41723083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 34352361 - 34352226
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34352361 |
cttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaag |
34352263 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatga |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352262 |
ctttacttgttcttgtgttgttactgatttgggatga |
34352226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 34360069 - 34359934
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34360069 |
cttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaag |
34359971 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatga |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359970 |
ctttacttgttcttgtgttgttactgatttgggatga |
34359934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9439576 - 9439710
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
9439576 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
9439674 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439675 |
ctttacttgttcttgtgttgttactgatttgggatg |
9439710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9444296 - 9444430
Alignment:
| Q |
1 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
9444296 |
cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag |
9444394 |
T |
|
| Q |
101 |
ctttacttgttcttgtgttgttactgatttgggatg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444395 |
ctttacttgttcttgtgttgttactgatttgggatg |
9444430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30235134 - 30235038
Alignment:
| Q |
1 |
cttataaataggagaatacaaac--taacacaaactaggagaaacctcaca-ggagaaactaatttttctctctatattttttctctcactactcta |
94 |
Q |
| |
|
||||||||||||||||||||||| |||||| | || ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30235134 |
cttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactcta |
30235038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 30234974 - 30234920
Alignment:
| Q |
155 |
acatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
30234974 |
acatgctatttatactagtgaaagagccatgccccaaccaattacatttatggca |
30234920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 16183857 - 16183913
Alignment:
| Q |
32 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
16183857 |
actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 27452 - 27508
Alignment:
| Q |
32 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
27452 |
actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 46191322 - 46191266
Alignment:
| Q |
32 |
actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
46191322 |
actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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