View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_43 (Length: 333)
Name: NF4267_high_43
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 5995250 - 5995128
Alignment:
| Q |
8 |
ttttcccaaatcgttaaacccaaaaagcgaaacaaccgcaatggaaccggagaccgcggcagcggctacgaagaggaggaatgtaagtgagagcttgaag |
107 |
Q |
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| T |
5995250 |
ttttcccaaatcgttaaacccaaaaagcgaaacaaccgcaacggaagcggagaccgcggcagcggctacgaagaggaggaatgtaagtgagagcttgaag |
5995151 |
T |
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| Q |
108 |
ttgcgaggattgaaaatggggtg |
130 |
Q |
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||| ||||||||||||||||||| |
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| T |
5995150 |
ttgagaggattgaaaatggggtg |
5995128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 5995004 - 5994937
Alignment:
| Q |
254 |
tgagggtattgattgccatatcaaaaagcttaggaatttgttggtcaagagaacttctggttttgatg |
321 |
Q |
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| T |
5995004 |
tgagggtattgattgccatatcaaaaagctaaggaatttgttggttaagagaacttctggttttgatg |
5994937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 1665444 - 1665482
Alignment:
| Q |
257 |
gggtattgattgccatatcaaaaagcttaggaatttgtt |
295 |
Q |
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| T |
1665444 |
gggtattgattgccatatcaaaaagcttacgaatttgtt |
1665482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 1887100 - 1887064
Alignment:
| Q |
254 |
tgagggtattgattgccatatcaaaaagcttaggaat |
290 |
Q |
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| T |
1887100 |
tgagggtattaattgccatatcaaaaagcttaggaat |
1887064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 1671535 - 1671571
Alignment:
| Q |
254 |
tgagggtattgattgccatatcaaaaagcttaggaat |
290 |
Q |
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|||||||||| ||||||||||||||||| |||||||| |
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| T |
1671535 |
tgagggtattaattgccatatcaaaaaggttaggaat |
1671571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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