View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_44 (Length: 324)
Name: NF4267_high_44
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 137 - 307
Target Start/End: Original strand, 12825839 - 12826008
Alignment:
| Q |
137 |
ggcagaaacactcttctcctccgtactccacaaatcttcctccaacactaaccccactagcttatcatatgttgatttgaccgnnnnnnntccctgactc |
236 |
Q |
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| T |
12825839 |
ggcagaaacactcttctcctccgtactccacaaatcttcctccaacactaaccccactagcttataatatgttgatttgaccg-aaaaaatccctaactc |
12825937 |
T |
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| Q |
237 |
ttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactca |
307 |
Q |
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| T |
12825938 |
ttccaaaccccaccgccacctatcctcctcatgagaccacctcatattctccaaatcattcaagagactca |
12826008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 12825684 - 12825817
Alignment:
| Q |
5 |
gattcatccaccgtctcacaaaaggtacaacactgaggagcatctgttggtaatacattcatcatcgaaagattcacccttgtaggtatttgatcatata |
104 |
Q |
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| T |
12825684 |
gattcatccaccgtctcacaaaaggtacaacactgaggagcatccgttggtaatacattcatcatcgaaagattcacccttgtagatattcgatcatata |
12825783 |
T |
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| Q |
105 |
ggaacttccaagaaaacgctacaaccttcgaagg |
138 |
Q |
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| T |
12825784 |
ggagcttccaagaaaacgctacaaccttcgaagg |
12825817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 47819766 - 47819704
Alignment:
| Q |
232 |
gactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatca |
294 |
Q |
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| T |
47819766 |
gactcttccaacccccacctccacctatcctccacatgcgaccacctcatatcctccaaatca |
47819704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 28571317 - 28571269
Alignment:
| Q |
227 |
tccctgactcttccaaaccccacctccacctatcctcttcatgagacca |
275 |
Q |
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| T |
28571317 |
tccccgactcctccaaaccccacttccacctatcttcctcatgagacca |
28571269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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