View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_45 (Length: 323)
Name: NF4267_high_45
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 45385806 - 45385513
Alignment:
| Q |
1 |
tgatgagaacccaaatgcttgcagtgtcatgtgaagttataattttgagaaatatcaagggtttgtatttaaatttattatttaaggctaaaataagtta |
100 |
Q |
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| T |
45385806 |
tgatgagaacccaaatgcttgctgtgtcatgtgaagttataattttcagaaatatcaagggtttgtatttaaatttattatttaaggctaaaataagtta |
45385707 |
T |
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| Q |
101 |
gatt-agtcactttcgagtattttcgaatgctagctagctaggaatatacttataacaactctcccaaaaaatgatgttgatagttagcgaattgcaata |
199 |
Q |
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| T |
45385706 |
gatttagtcactttgtagtattttcgaatgctag--------gaatatacttataacaactctcccaaaaaatgatgttgatagttagcgaattgcaata |
45385615 |
T |
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| Q |
200 |
tcttcttggaaagcatta--tataacggtcctgcattttaacatgctttaggaagagacatatacatttgtgggcgtgggaccatctttcctacattatt |
297 |
Q |
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| T |
45385614 |
tcttcttggaaagcattatatataacggtcctgcattttaacatactttaggaagagac--atacattt------gtgggaccatctttcctacattatt |
45385523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45389852 - 45389790
Alignment:
| Q |
1 |
tgatgagaacccaaatgcttgcagtgtcatgtgaagttataattttgagaaatatcaagggtt |
63 |
Q |
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|||||||||||||||||||||||| |||||||||| || || ||||||||| ||||| |||| |
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| T |
45389852 |
tgatgagaacccaaatgcttgcagcgtcatgtgaaattgcaaatttgagaaacatcaaaggtt |
45389790 |
T |
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