View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_48 (Length: 311)
Name: NF4267_high_48
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 51707668 - 51707379
Alignment:
| Q |
1 |
tctggtgttatttgtttatgaggattgattttaccattaaaaaaggccgaacaatacaatttattatctgcttgtcttccatttatgtataattagtcta |
100 |
Q |
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| T |
51707668 |
tctggtgttatttgtttatgaggattgattttaccattaaaaaaggccgaacaacacaatttattatctgcttgtcttccatttatgtataattagtcta |
51707569 |
T |
|
| Q |
101 |
tcaacaaacttaggctatatttgttattgactttcttgagcttatctacaggtacatacatacactggtgagactcccacaacatatgctttaaggcaaa |
200 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51707568 |
tcgacaaacttagtctatatttgttattgactttcttgagcttatctacggg----tacatacactggtgagactcccacaacatatgctttaaggcaaa |
51707473 |
T |
|
| Q |
201 |
agttaaagcgcataaacaaagttaaagttttatacttcatagtgtaaaagtttatggaaaatcaannnnnnnctgcaaacaaggatacaaattt |
294 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
51707472 |
agttaaagcacataaacaaagttaaagttttatccttcatagtgtaaaagtttatggaaaatcaatttttttccgcaaacaaggatacaaattt |
51707379 |
T |
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