View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_69 (Length: 250)
Name: NF4267_high_69
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 24397743 - 24397556
Alignment:
| Q |
9 |
agcagagatatttgacaaatcttaaagtgtgtgtatacctgacaaatcttgaagcgcagatttaaacatcacacttctgagtcatttaatgtgtgtgaat |
108 |
Q |
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||||||||||||||||||||| | |||||||| |||| |||||||||||||||| || ||||| |||| ||||||||| ||||||||| |||||||| || |
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| T |
24397743 |
agcagagatatttgacaaatcatgaagtgtgtatatatctgacaaatcttgaagtgcggatttgaacaccacacttctcagtcatttagtgtgtgtggat |
24397644 |
T |
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| Q |
109 |
tttgccgttagatacattagnnnnnnnnnnnnnnnnncttatcttaaagtacttatttaaaaagactaatagatcatatattaaactt |
196 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24397643 |
tttgccgttagatacattagaaaataaaagaaaaaaacttattttaaagtacttatttaaaaagactaatagatcatattttaaactt |
24397556 |
T |
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