View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_70 (Length: 249)
Name: NF4267_high_70
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 3474897 - 3474729
Alignment:
| Q |
46 |
atatagtatttctcttgtttggcaaaggtaagaaagagggaggagagataagttttgcgtgggacccacgtgttttttgttctcccc-tataagcgaaga |
144 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
3474897 |
atatggtatttctcttgtttggcaaaggcaagaaagagggaggagagataagttttgcgtgggacccacgttttttttgttctccccatataagcgaaga |
3474798 |
T |
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| Q |
145 |
aagaggagagaaatatacacttactccctttaccttttata-ccttcaatttaagacacaacacacctt |
212 |
Q |
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| T |
3474797 |
aagaggagagaaatatacatttactccctttgccttttatacccttcaatttaagacacaacgcacctt |
3474729 |
T |
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Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 12188001 - 12188175
Alignment:
| Q |
46 |
atatagtatttctcttgtttggcaaaggtaagaaagagggaggagagataagttttgcgtgggacccacgtgttttttgttctcccctataagc------ |
139 |
Q |
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| T |
12188001 |
atatggtatttctcttgtttggcaaaggcaagaaagagggaggagagataagttttgcgtgggatccacgtgttttttgttcgcccctataaacgaagaa |
12188100 |
T |
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| Q |
140 |
-gaagaaagaggagagaaatatacacttactccctttaccttttata-ccttcaatttaagacacaacacacctt |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
12188101 |
agaagaaagaggagagaaatatacatttactccctttgccttttatacccttcaatttaagacacaacacacctt |
12188175 |
T |
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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 25883382 - 25883525
Alignment:
| Q |
70 |
aaggtaagaaagagggaggagagataagttttgcgtgggacccacgtgttttttgttctcccctataagcgaagaaagaggagagaaatatacacttact |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
25883382 |
aaggtaagaaagagggaggagagataagttttgcgtgggacccacgtgctttttgttctcccatataagcgaagaaagaggagagaaatttacatttact |
25883481 |
T |
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| Q |
170 |
ccctttaccttttata-ccttcaatttaagacacaacacacctt |
212 |
Q |
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|||||| | ||||||| ||||||||||||||||||||||||||| |
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| T |
25883482 |
ccctttgctttttatacccttcaatttaagacacaacacacctt |
25883525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 31814473 - 31814647
Alignment:
| Q |
46 |
atatagtatttctcttgtttggcaaaggtaagaaagagggaggagagataagttttgcgtgggacccacgtgttttttgttctcccctataagc------ |
139 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |
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| T |
31814473 |
atatggtatttctcttgtttggcaaaggcaagaaagagggaggagagataagttttgcgtgggatccacgtgttttttgttcgcccctataaacgaagaa |
31814572 |
T |
|
| Q |
140 |
-gaagaaagaggagagaaatatacacttactccctttaccttttata-ccttcaatttaagacacaacacacctt |
212 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||| |
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| T |
31814573 |
agaagaaagaggagagaaatatacatttactccctttgccttttatacccttcaatttaaaacacaacacacctt |
31814647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 38587611 - 38587505
Alignment:
| Q |
51 |
gtatttctcttgtttggcaaaggtaagaaagagggaggagagataagttttgcgtgggacccacgtgttttttgttctcccct-ataagcgaagaaagag |
149 |
Q |
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|||||||||| ||||||||||||| |||||||| || ||| || || || | ||||| |||| | |||||||||||||||| || |||||||||| || |
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| T |
38587611 |
gtatttctctagtttggcaaaggtgagaaagagagaagagggacaaaattggtgtgggtcccatgcattttttgttctcccctaattagcgaagaaacag |
38587512 |
T |
|
| Q |
150 |
gagagaa |
156 |
Q |
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||||||| |
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| T |
38587511 |
gagagaa |
38587505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 13863668 - 13863564
Alignment:
| Q |
53 |
atttctcttgtttggcaaaggtaagaaagagggaggagagataagttttgcgtgggacccacgtgttttttgttctcccct-ataagcgaagaaagagga |
151 |
Q |
| |
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|||||||| ||||||||||||| |||||||| || ||| || || || | ||||| |||| | |||||||||||||||| || |||||||||| |||| |
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| T |
13863668 |
atttctctagtttggcaaaggtgagaaagagagaagagggacaaaattggtgtgggtcccatgcattttttgttctcccctaattagcgaagaaacagga |
13863569 |
T |
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| Q |
152 |
gagaa |
156 |
Q |
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||||| |
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| T |
13863568 |
gagaa |
13863564 |
T |
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