View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_75 (Length: 238)
Name: NF4267_high_75
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 47807731 - 47807946
Alignment:
| Q |
15 |
agagatgacaatttaaaatggaattattcatgtttggagaacaaatgtcccatctccaatagaaacgaaattgtcttgttctgtcatccactaaaaaagg |
114 |
Q |
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| T |
47807731 |
agagatgacaatttaaaattgaattattcatgtttggagaacaaatgttccgtctccaataaaaacgaagttgtcttgttctgtcatccactaaaaaagg |
47807830 |
T |
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| Q |
115 |
cagattttagacatatatatttctaatgaaaattgctaaagcttgcgagacatttacacaatgaatccttcccgaaatgtatttccatcttctctctcat |
214 |
Q |
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| T |
47807831 |
cagattttagacatatatatttctaatgaaaattgctaaagcttgcgagacatttacacaacgaatccttcccgaaatgtatttccatcttctctctcat |
47807930 |
T |
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| Q |
215 |
gctgatatatctctct |
230 |
Q |
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| T |
47807931 |
gctgatatatatctct |
47807946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 6061118 - 6061040
Alignment:
| Q |
144 |
aaattgctaaagcttgcgagacatttacacaatgaatccttcccgaaatgtatttccatcttctctctcatgctgatat |
222 |
Q |
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| T |
6061118 |
aaattgctaaatcttgagagacattttgacagcgaaaccgtcccaaagtgtattttcatcttctctctcatgttgatat |
6061040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 9361723 - 9361634
Alignment:
| Q |
140 |
atgaaaattgctaaagcttgcgagacatttacacaatgaatccttcccgaaatgtatttccatcttctctctcatgctgatatatctctct |
230 |
Q |
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| T |
9361723 |
atgaaaattgctaaatctcgcgacacatttacaca-tgaatccttcccgaaggctattttcatcttctctctcatggtaatatatccctct |
9361634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 34977346 - 34977257
Alignment:
| Q |
142 |
gaaaattgctaaagcttgcgagacatttacacaatgaatcc-ttcccgaaatgtatttccatcttctctctcatgctgatatatctctct |
230 |
Q |
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| T |
34977346 |
gaaaattgctaaatctcgcaagacatttacacagtaaatccctttctgaagtgtgttttcagcttctctctcatgttgatatatctctct |
34977257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 36662107 - 36662198
Alignment:
| Q |
142 |
gaaaattgctaaagcttgcgagacatttacacaatgaatccttc---ccgaaatgtatttccatcttctctctcatgctgatatatctctct |
230 |
Q |
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|||||||| |||| || | ||||||||||||||||||||||| | | || ||||||| ||||||||||||||| ||||||||| |||| |
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| T |
36662107 |
gaaaattgttaaatctcgtgagacatttacacaatgaatcctcctttcaaaagtgtattttcatcttctctctcatattgatatatccctct |
36662198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 32378784 - 32378748
Alignment:
| Q |
194 |
tatttccatcttctctctcatgctgatatatctctct |
230 |
Q |
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| T |
32378784 |
tattttcatcttctctctcatgctgatatatccctct |
32378748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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