View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_high_76 (Length: 238)

Name: NF4267_high_76
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_high_76
NF4267_high_76
[»] chr4 (2 HSPs)
chr4 (18-206)||(40821257-40821445)
chr4 (89-206)||(40825998-40826114)
[»] chr7 (14 HSPs)
chr7 (21-206)||(20292398-20292582)
chr7 (21-206)||(20271591-20271775)
chr7 (27-206)||(20170165-20170344)
chr7 (27-206)||(20172158-20172337)
chr7 (21-193)||(20296836-20297008)
chr7 (22-193)||(20301612-20301783)
chr7 (24-195)||(20281915-20282086)
chr7 (24-206)||(20064625-20064806)
chr7 (33-206)||(20092200-20092372)
chr7 (59-206)||(20241389-20241535)
chr7 (22-194)||(20262033-20262205)
chr7 (66-194)||(20229450-20229578)
chr7 (24-206)||(20287027-20287208)
chr7 (140-172)||(20291946-20291978)
[»] scaffold0027 (1 HSPs)
scaffold0027 (59-172)||(135252-135365)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 40821257 - 40821445
Alignment:
Q  18 gtactctccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821257 gtactctccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtc 40821356  T
Q  118 cattcaataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821357 cattcaataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 40821445  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 40825998 - 40826114
Alignment:
Q  89 atttgatgtccaaatgacttgtttatgtccattcaataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggttt 188  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||| || | | ||||||||||||| ||||||| | |||||    
T  40825998 atttgatgaccaaatgacttgtttttgtccattcaataccgcaagattgccatcctcagatatagtaataatcccattagaatcattcagtgatcggttt 40826097  T
Q  189 ctgttttgccacccatat 206  Q
    ||| ||||||||||||||    
T  40826098 ctg-tttgccacccatat 40826114  T

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Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 20292582 - 20292398
Alignment:
Q  21 ctctccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccat 120  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||| |    
T  20292582 ctctccaaaaggacaaggttaccaaagtcggaaaactgagaacttgtattggttgctatgttggagacatttgatgtccaaatgacttgcttctgtccgt 20292483  T
Q  121 tcaataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    | |||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||| || |||||||||||    
T  20292482 ttaataccacaagatttccatcttcagatattgccgcagtcccattagaatcattcagtggttggtttctg-ttcgccacccatat 20292398  T

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Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 20271775 - 20271591
Alignment:
Q  21 ctctccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccat 120  Q
    |||||||||||||||||||| ||| ||| ||||||||| ||| | ||||||||||||||||||||||||||||||| ||||  |||| |||| |||||||    
T  20271775 ctctccaaaaggacaaggttgccatagtctgaaaactgcgaagtggtattggatgctatgttggaaacatttgatgaccaatagactcgtttctgtccat 20271676  T
Q  121 tcaataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||| ||||||||||||||    
T  20271675 tcaataccacaagatttccatcttcagatattgtgacaatcccattagtatcattcaatggttggtttctg-tttgccacccatat 20271591  T

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Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 20170165 - 20170344
Alignment:
Q  27 aaaaggacaaggttaccaaagtttgaaaa-ctgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattcaat 125  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||| |||||| |||||||||| |||| ||||||||||||    
T  20170165 aaaaggacaaggttaccaaagtctgaaaagctgagaacttgtatttgttgctatgttggaaacacttgatgaccaaatgactcgtttctgtccattcaat 20170264  T
Q  126 accacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||| || |||||||||||    
T  20170265 accacaagatttccatcttcaaatattgtgacaatcccattagaatcattcagtggttagtttctg-ttagccacccatat 20170344  T

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Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 20172158 - 20172337
Alignment:
Q  27 aaaaggacaaggttaccaaagtttgaaaa-ctgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattcaat 125  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||| |||||| |||||||||| |||| ||||||||||||    
T  20172158 aaaaggacaaggttaccaaagtctgaaaagctgagaacttgtatttgttgctatgttggaaacacttgatgaccaaatgactcgtttctgtccattcaat 20172257  T
Q  126 accacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||| || |||||||||||    
T  20172258 accacaagatttccatcttcaaatattgtgacaatcccattagaatcattcagtggttagtttctg-ttagccacccatat 20172337  T

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Target: chr7; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 20297008 - 20296836
Alignment:
Q  21 ctctccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccat 120  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||| | | ||||||||||||||||||||||| ||||||||||||||| | |||||    
T  20297008 ctctccaaaaggacaaggttaccaaagtctgaaaattgaaaacttgtaattgttgctatgttggaaacatttgatgaccaaatgacttgtttctatccat 20296909  T
Q  121 tcaataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgtt 193  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||    
T  20296908 ttaataccacaagatttccatcttcagatattgtgacaatcccattagaatcattcagtgattggtttttgtt 20296836  T

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Target: chr7; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 20301783 - 20301612
Alignment:
Q  22 tctccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccatt 121  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |||| ||||||||    
T  20301783 tctccaaaaggacaaggttgccatagtctgaaaactgagaacttgtatttgttgctatgttggaaacatttgatgaccaaatgactcgtttctgtccatt 20301684  T
Q  122 caataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgtt 193  Q
     |||||| ||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  20301683 taatacctcaatatttccatcttcggatattgtgacaatcccattagaatcattcagtggttggtttctgtt 20301612  T

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Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 20282086 - 20281915
Alignment:
Q  24 tccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattca 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||||| |||| |||||||| |    
T  20282086 tccaaaaggacaaggttaccaaagtctgaaaactgagaacttgtatttgttgctatgttggaaacattcgatgaccatatgactcgtttctgtccattta 20281987  T
Q  124 ataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgtttt 195  Q
    ||| | |||||||||||||||| |||||||||| | ||||||||||||| |||||||| |||||||||||||    
T  20281986 atatcgcaagatttccatcttcggatattgtgaaattcccattagaatcattcagtggctggtttctgtttt 20281915  T

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Target: chr7; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 20064625 - 20064806
Alignment:
Q  24 tccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattca 123  Q
    ||||||||||||||||| |||  ||  |||||||| ||| | ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  20064625 tccaaaaggacaaggtttccatggtccgaaaactgggaagtggtattggattctatgttggaaacatttgatgaccaaatgacttgtttctgtccattta 20064724  T
Q  124 ataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| || | ||||||||||||| ||||||||||||||    
T  20064725 ataccacaagatttccatcttcagatatggtgatagtcccattagaatcatttattggttggtttctg-tttgccacccatat 20064806  T

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Target: chr7; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 20092200 - 20092372
Alignment:
Q  33 acaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattcaataccacaa 132  Q
    ||||||||||||||||  ||||   | ||| | ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||    
T  20092200 acaaggttaccaaagtcagaaattcgggaagtggtattggatgctatgttggaaacatttgatgaccaaatgacttgtttctttccatttaataccacaa 20092299  T
Q  133 gatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    |||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  20092300 gatttccatcttcaaatattatgacaatcccattagaatcattcagtggttggtttctg-tttgccacccatat 20092372  T

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Target: chr7; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 20241535 - 20241389
Alignment:
Q  59 agaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattcaataccacaagatttccatcttcagatattgtgaca 158  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  20241535 agaacttgtatttgttgctatgttggaaacatttgatgaccaaatgactcgtttctgtccatttaataccacaagatttccatcttcagatatcgtgaca 20241436  T
Q  159 gtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
     |||||||||| || |||||||||||||||||| ||||||||||||||    
T  20241435 atcccattagagtcattcagtggttggtttctg-tttgccacccatat 20241389  T

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Target: chr7; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 20262205 - 20262033
Alignment:
Q  22 tctccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccatt 121  Q
    |||||| ||| ||||||||||| ||    ||||| |||||||||||||| | || |||||||||||||||||||| |||||  |||||||| ||||||||    
T  20262205 tctccagaagcacaaggttaccgaaacccgaaaagtgagaacttgtatttgttgttatgttggaaacatttgatgaccaaacaacttgtttctgtccatt 20262106  T
Q  122 caataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttt 194  Q
     ||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||| ||||||||||    
T  20262105 taataccacaagatttccatgttcagatattgtgacaatcccattagaatcattcagtagtttgtttctgttt 20262033  T

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Target: chr7; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 20229578 - 20229450
Alignment:
Q  66 gtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattcaataccacaagatttccatcttcagatattgtgacagtcccat 165  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||| |||||||| |||||||| |||||||||| |||||||||||||||| ||||||    
T  20229578 gtattggatactatgttggaaacatacgatgaccaaatgacttgtttctgtccatttaataccacgagatttccatgttcagatattgtgacaatcccat 20229479  T
Q  166 tagaatcgttcagtggttggtttctgttt 194  Q
    ||||||| |||||||||| ||||||||||    
T  20229478 tagaatcattcagtggtttgtttctgttt 20229450  T

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Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 20287208 - 20287027
Alignment:
Q  24 tccaaaaggacaaggttaccaaagtttgaaaactgagaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattca 123  Q
    ||||| ||||||||||||||| | | ||||| ||| | | | ||||  |||| | |||| || | |||||||| |||||| |||||||| ||||||||||    
T  20287208 tccaagaggacaaggttaccataatctgaaagctgggcagtagtatgtgatgttgtgttagacaaatttgatgaccaaattacttgtttttgtccattca 20287109  T
Q  124 ataccacaagatttccatcttcagatattgtgacagtcccattagaatcgttcagtggttggtttctgttttgccacccatat 206  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||  | ||||||| ||||||| ||||||||||||||    
T  20287108 ataccacaagatttccatcctcagatattgtgacaatcccattagaatcacttagtggtttgtttctg-tttgccacccatat 20287027  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 20291978 - 20291946
Alignment:
Q  140 atcttcagatattgtgacagtcccattagaatc 172  Q
    |||||||||||||||||||||||||||||||||    
T  20291978 atcttcagatattgtgacagtcccattagaatc 20291946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 135252 - 135365
Alignment:
Q  59 agaacttgtattggatgctatgttggaaacatttgatgtccaaatgacttgtttatgtccattcaataccacaagatttccatcttcagatattgtgaca 158  Q
    |||| |||||| |||||||||||| |||| |||||||| || ||||  | | || |||||| | | ||||| || ||||||||||||| |||||||||||    
T  135252 agaatttgtatcggatgctatgttcgaaatatttgatgacccaatgcttcgcttctgtccaattattaccataatatttccatcttcaaatattgtgaca 135351  T
Q  159 gtcccattagaatc 172  Q
     || |||| |||||    
T  135352 atctcattcgaatc 135365  T

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