View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_81 (Length: 233)
Name: NF4267_high_81
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_81 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37879865 - 37880091
Alignment:
| Q |
1 |
tatacctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcactaatcatcatacatccatcttcacaacatagcacgttacatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37879865 |
tatacctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcattaatcatcatacatccatcttcacaacatagcacgttacatgt |
37879964 |
T |
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| Q |
101 |
cccctccaatgtaaac-nnnnnnnnnnnnnatgtcggctgagaatttcaaaaagtgctcttactactgnnnnnnnnnnnngtcctttctcaaagtattta |
199 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37879965 |
accctccaatgtaaactttttattttttttatgtcggctgagaatttcaaaaagtgctcttactactgtttttcttttttgtcctttctcaaagtattta |
37880064 |
T |
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| Q |
200 |
atatgtatcaattcttctaagtattat |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37880065 |
atatgtatcaattcttctaagtattat |
37880091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 37909129 - 37909226
Alignment:
| Q |
1 |
tatacctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcactaatcatcatacatccatcttcacaacatagcacgttacat |
98 |
Q |
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|||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |
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| T |
37909129 |
tatacctttaaatcggtggtgattaagctctcttttaactatcttccatcacctcattaatcatcatacatccattttcacaacataacacgttacat |
37909226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 37865950 - 37866061
Alignment:
| Q |
6 |
ctttatatctgtggtgcttaagctctcttttaactat-cttccatcacctcactaatcatcatacatccatcttcacaacatagcacgttacatgtcccc |
104 |
Q |
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|||||||||||||||| ||||||||||| | | || |||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||| ||| |
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| T |
37865950 |
ctttatatctgtggtgtttaagctctctctatgccattcttccatcacctcattaatcatcatacattcattttcacaacatagcacgttcaatgtaccc |
37866049 |
T |
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| Q |
105 |
tccaatgtaaac |
116 |
Q |
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|||||||||||| |
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| T |
37866050 |
tccaatgtaaac |
37866061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37916318 - 37916404
Alignment:
| Q |
1 |
tatacctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcactaatcatcatacatccatcttcacaacata |
87 |
Q |
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|||||||||||||| ||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
37916318 |
tatacctttatatcaatggtgtgtaagctccctttcaactatcttccatcacctcattaatcatcatacacccatcttcacaacata |
37916404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 29948 - 29851
Alignment:
| Q |
1 |
tatacctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcactaatcatcatacatccatcttcacaacatagcacgttacat |
98 |
Q |
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|||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |
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| T |
29948 |
tatacctttaaatcggtggtgattaagctctcttttaactatcttccatcacctcattaatcatcatacatccattttcacaacataacacgttacat |
29851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8710 - 8602
Alignment:
| Q |
1 |
tatacctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcactaatcatcatacatccatcttcacaacatagcacgttacatgt |
100 |
Q |
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|||||||||| ||| |||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
8710 |
tatacctttaaatcggtggtgatgaacctctcttttaactatcttccatcacctcattaatcatcatacatccattttcacaacataacacgttacatgt |
8611 |
T |
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| Q |
101 |
cccctccaa |
109 |
Q |
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||||||| |
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| T |
8610 |
atcctccaa |
8602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 19038 - 18930
Alignment:
| Q |
1 |
tatacctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcactaatcatcatacatccatcttcacaacatagcacgttacatgt |
100 |
Q |
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|||||||||| ||| |||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
19038 |
tatacctttaaatcggtggtgatgaacctctcttttaactatcttccatcacctcattaatcatcatacatccattttcacaacataacacgttacatgt |
18939 |
T |
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| Q |
101 |
cccctccaa |
109 |
Q |
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||||||| |
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| T |
18938 |
atcctccaa |
18930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 1519 - 1441
Alignment:
| Q |
4 |
acctttatatctgtggtgcttaagctctcttttaactatcttccatcacctcactaatcatcatacatccatcttcaca |
82 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
1519 |
acctttatatctgtggtgtttaagctcacttttaactatcttccatcacttcattaatcatcatacattcatcttcaca |
1441 |
T |
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