View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_82 (Length: 232)
Name: NF4267_high_82
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_82 |
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Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 37304942 - 37304999
Alignment:
| Q |
161 |
cttacgcttccatttcttggatctgatgctgtgtatgacggtgataacgtttcttctt |
218 |
Q |
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| T |
37304942 |
cttacgcttccatttcttggatctgatgctgtgtatgacggtgataacgtttcttctt |
37304999 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37304782 - 37304826
Alignment:
| Q |
1 |
ctgcttagttccttcctttgcttgtcatcagggtgtggacattcc |
45 |
Q |
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| T |
37304782 |
ctgcttagttccttcctttgcttgtcatcagggtgtggacattcc |
37304826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16825204 - 16825164
Alignment:
| Q |
1 |
ctgcttagttccttcctttgcttgtcatcagggtgtggaca |
41 |
Q |
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| T |
16825204 |
ctgcttaactccttcctttgcttgtcatctgggtgtggaca |
16825164 |
T |
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