View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_low_1 (Length: 796)
Name: NF4267_low_1
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_1 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 394 - 796
Target Start/End: Complemental strand, 36996152 - 36995750
Alignment:
| Q |
394 |
gagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatggtagagagcatcttgacatgtttgaagcaatgatgatcaagt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36996152 |
gagtaagcctaacactatcaagagattgtggtgttgtcataaactatgtgtcatgatggtagagagcatcttgacatgtttgatgcaatgatgatcaagt |
36996053 |
T |
|
| Q |
494 |
aacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttattctgtaagagtcttataagtaaaacaattga |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36996052 |
aacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttattctgtaagagtcttataagtaaaacaattga |
36995953 |
T |
|
| Q |
594 |
gaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaatgttgtcgtatacctaacgatgtatgtaacaatttcctttnnn |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995952 |
gaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaatgttgtcgtatacctaacgatgtatgtaacaatttcctttaaa |
36995853 |
T |
|
| Q |
694 |
nnnnnnnntgtatgcaacaaattcaaacaagcagctttaactttatttcataatatttatatgaaatctttacagaaaataaagatagatgattcactca |
793 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
36995852 |
aaaaaaaatgtatgcaacaaattcaaacaagcagctttaactttatttcatcatatttatatgaaatcttgacagaacatacagatagatgattcactca |
36995753 |
T |
|
| Q |
794 |
att |
796 |
Q |
| |
|
||| |
|
|
| T |
36995752 |
att |
36995750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 36996527 - 36996209
Alignment:
| Q |
19 |
cctatatagcattatttcttggttctgtctctgaatgggacaatggttacaagcaaggttgttctcgaatcagattcttcaatatatgcacgcagttctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36996527 |
cctatatagcattatttcttggttctgtctctgaatgggacaatggttacaagcaaggttgttctcgaatcagattcttcaatatatgcatgcagttctt |
36996428 |
T |
|
| Q |
119 |
atcaagaattggtgtccgtcgacgcagccatgtgctttcatagaatcactcatcaatcgttttacaatgaaggagtaacaagtatcaaaaactaatttaa |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36996427 |
atcaagaattagtgtccgtcgacgcagccatgtgctttcatagaatcactcatcaatcgttttacaatgaaggagtaacaagtatcaaaaactaatttaa |
36996328 |
T |
|
| Q |
219 |
agcaggcaaactatatacattattcttaggcatcctatgtcgggttgtttcattcatttatgtcacgattatgtaggtgttttatttaattgttggtgtg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36996327 |
agcaggcaaactatatacattattcttaggcatcctatgtcgggttgtttcattcatttatgtcacgattatgtaggtgttttatttaattgttggtgtg |
36996228 |
T |
|
| Q |
319 |
tctgtaacgatctttactt |
337 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36996227 |
tctgtaacgatctttactt |
36996209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 590 - 656
Target Start/End: Complemental strand, 36990346 - 36990280
Alignment:
| Q |
590 |
ttgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattttaaaatgttgt |
656 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
36990346 |
ttgagaaaaataaatcatgcaattcaatttacatttaaagttgccgacatatattttatattgttgt |
36990280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 472 - 562
Target Start/End: Complemental strand, 36990520 - 36990434
Alignment:
| Q |
472 |
tttgaagcaatgatgatcaagtaacaagatttccatcgatcatgtacaattgtacatacttcccacaatgatatatatttttaattcttat |
562 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
36990520 |
tttgaagtaatgatgttcaagtaacaagttttccatc----atgtacaattgtacatactccccacaatgatatagattttcaattcttat |
36990434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 590 - 645
Target Start/End: Complemental strand, 36990572 - 36990518
Alignment:
| Q |
590 |
ttgagaaaaatacatcatgcaattcaatttacatttaaagttgacgacatatattt |
645 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36990572 |
ttgaaaaaaata-atcatgcaattcaatttacatttaaagttgccgacatatattt |
36990518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University