View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_13 (Length: 480)
Name: NF4267_low_13
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Complemental strand, 11960545 - 11960090
Alignment:
| Q |
7 |
cagtttgatagggatgtaaaaattggaaatttaaaattaaactaaaaagttaacaccaccaacttcatcctttaatcttctccaaaacatcattatgaat |
106 |
Q |
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| T |
11960545 |
cagtttgatagggatgtaaaaattggaaatttaaaattaaactaaaaagttaacaccaccaacttcatcctttaatcttctccaaaacatcatcatgaat |
11960446 |
T |
|
| Q |
107 |
ttatgactatccctgaaactagcaagattttttccactgcta-ttcgccacacaccaccgctgccaaaccacaaacaactcttgggaaaacacatacaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11960445 |
ttatgactatccctgaaactagcaagattttttccactgccacttcgccacacaccaccgctgccaaaccacaaacaactcttgggaaaacacatacaaa |
11960346 |
T |
|
| Q |
206 |
tccagcattgttgtcaaaatacacttccaagttttttcatcaccaacaaacacaatcaattttccttttgcaccaaattatattggtttattattgtctt |
305 |
Q |
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| T |
11960345 |
tccagcattgttgtcaaaatacacttccaagttttttcatcaccaacaaacacaaacaattttccttttgcaccaaattatattggtttattattgtctt |
11960246 |
T |
|
| Q |
306 |
tttgagaagcttcaaaatataacattataattttacagagaacaagtgattcctcatcattatcacaatctcttctccctttctttccctcttccacaac |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11960245 |
tttgagaagcttcaaaatataacattataattttacagagaacaagtgattcctcatcattatcacaatctcttctccctttctttccctcttccacaac |
11960146 |
T |
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| Q |
406 |
atcatgaaatccacctcgcaccacctccatgcaaccacaagaactctcctctctct |
461 |
Q |
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| T |
11960145 |
atcatgaaatccaccttgcaccacctccatgcaaccacaagaactctcctctctct |
11960090 |
T |
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