View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_low_14 (Length: 475)
Name: NF4267_low_14
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_14 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 179 - 475
Target Start/End: Complemental strand, 1608994 - 1608698
Alignment:
| Q |
179 |
cacattttcctataattcattgaccatagcgaggaaaaagaaaagtgtctcacaaatagtaaaaccttcaaactttaccaaatttcaatttaattactct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1608994 |
cacattttcctataattcattgaccatagcgaggaaaaagaaaagtgtctcacaaatagtaaaaccttcaaactttaccaaatttcaatttaattactct |
1608895 |
T |
|
| Q |
279 |
gcaaatttcaaactttacaaaatctcataaaaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatctttactcttcaat |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1608894 |
gcaaatttcaaactttacaaaatctcataaaaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatcttcactcttcaat |
1608795 |
T |
|
| Q |
379 |
aactttctcaaagctcataaacttcttagtcctcttaatcattatctcctaccttttatattcccttagttatggttagtcatagcagtgatggtgt |
475 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1608794 |
aactttatcaaagctaataaacttcttattcctcttaatcattatctcctaccttttctattcccttagtgatggttagtcatagcagtgatggtgt |
1608698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 1609149 - 1609056
Alignment:
| Q |
18 |
ctttttgaaaatgttttgcaccttactataattgttgaatgcnnnnnnnncatgggagttaggcttaaccttacgtagtgattaaactcatgat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1609149 |
ctttttgaaaatgttttgcaccttactataattgttgaatgcaaaaaaaacatgggagttaggcttaaccttacgtagtgattaaactcatgat |
1609056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 11091455 - 11091533
Alignment:
| Q |
369 |
actcttcaataactttctcaaagctcataaacttcttagtcctcttaatcattatctcctaccttttatattcccttag |
447 |
Q |
| |
|
||||||| || ||||||||||||||||| | ||||| |||||||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
11091455 |
actcttccatcactttctcaaagctcatcactttcttcttcctcttaatcacaatctcttaccttttttattctcttag |
11091533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University