View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_low_16 (Length: 463)

Name: NF4267_low_16
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_low_16
NF4267_low_16
[»] chr5 (7 HSPs)
chr5 (19-271)||(26353266-26353519)
chr5 (272-362)||(32325811-32325901)
chr5 (272-362)||(7992408-7992498)
chr5 (272-362)||(12904980-12905070)
chr5 (190-268)||(9816563-9816641)
chr5 (272-323)||(34641930-34641981)
chr5 (49-83)||(38434774-38434808)
[»] chr3 (9 HSPs)
chr3 (47-271)||(26648626-26648848)
chr3 (267-362)||(53208685-53208780)
chr3 (276-362)||(32130160-32130246)
chr3 (100-263)||(20047330-20047496)
chr3 (272-362)||(7322855-7322945)
chr3 (272-344)||(9454604-9454676)
chr3 (96-271)||(20014618-20014793)
chr3 (212-255)||(26654636-26654680)
chr3 (97-163)||(20006701-20006767)
[»] chr7 (5 HSPs)
chr7 (272-363)||(36167730-36167821)
chr7 (272-361)||(19886572-19886661)
chr7 (272-361)||(32775171-32775260)
chr7 (271-362)||(12859245-12859336)
chr7 (270-315)||(11600122-11600167)
[»] chr8 (8 HSPs)
chr8 (274-362)||(1548139-1548227)
chr8 (273-362)||(34784519-34784608)
chr8 (271-362)||(23033395-23033486)
chr8 (276-362)||(3117707-3117793)
chr8 (271-357)||(3277517-3277603)
chr8 (272-362)||(20900774-20900864)
chr8 (300-347)||(29168561-29168608)
chr8 (272-308)||(15657347-15657383)
[»] chr2 (6 HSPs)
chr2 (274-362)||(44673172-44673260)
chr2 (272-362)||(25438287-25438377)
chr2 (276-345)||(37154903-37154972)
chr2 (272-323)||(6536545-6536596)
chr2 (271-323)||(21006375-21006427)
chr2 (271-323)||(24132210-24132262)
[»] chr1 (1 HSPs)
chr1 (48-243)||(1718684-1718879)
[»] chr6 (1 HSPs)
chr6 (270-362)||(13425676-13425768)
[»] chr4 (5 HSPs)
chr4 (272-362)||(16497910-16498000)
chr4 (274-362)||(2588491-2588579)
chr4 (274-363)||(5650758-5650847)
chr4 (272-347)||(52249500-52249575)
chr4 (272-323)||(28075449-28075500)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 26353266 - 26353519
Alignment:
Q  19 agtttggctttagattcacttcatgatttacatagcaaaatatgtgttactcatgccaatactacctatatacaaccaataacacaagcatatcagttaa 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353266 agtttggcattagattcacttcatgatttacatagcaaaatatgtgttactcatgccaatactacctatatacaaccaataacacaagcatatcagttaa 26353365  T
Q  119 taaaaatatatagattaactcattaaaactagtattacttattccttcaattgttttcaacacaat-aagagtatgaaaagagcatcactgtcgtgagtt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26353366 taaaaatatatagattaactcattaaaactagtattacttattccttcaattgttttcaacacaatcaagagtatgaaaagagcatcactgtcgtgagtt 26353465  T
Q  218 tcatgaagagaattcaaaaacaaaataaagttttaagaagaagatgatggtggt 271  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26353466 tcatgaagggaattcaaaaacaaaataaagttttaagaagaagatgatggtggt 26353519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 32325901 - 32325811
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32325901 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 32325811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 7992498 - 7992408
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  7992498 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 7992408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 12905070 - 12904980
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    |||||||||||||||||||| || ||| |||||||||||||||| ||||||||||| ||| ||| || |||||||||||||||||||||||    
T  12905070 caaggtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaacacatcgaccatgcttcgatcctacttacgaacc 12904980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 9816641 - 9816563
Alignment:
Q  190 tatgaaaagagcatcactgtcgtgagtttcatgaagagaattcaaaaacaaaataaagttttaagaagaagatgatggt 268  Q
    |||||||| |||||||||||| ||||||||| |||||||||| |||| |||||||||| |||||||||| |||| ||||    
T  9816641 tatgaaaatagcatcactgtcatgagtttcaggaagagaattaaaaagcaaaataaaggtttaagaagacgatggtggt 9816563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 34641981 - 34641930
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgc 323  Q
    |||||||| ||||| |||||||| |||||||||||||||||||| |||||||    
T  34641981 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 34641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 38434774 - 38434808
Alignment:
Q  49 catagcaaaatatgtgttactcatgccaatactac 83  Q
    ||||||||||||||||||| |||||||||||||||    
T  38434774 catagcaaaatatgtgttagtcatgccaatactac 38434808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 26648848 - 26648626
Alignment:
Q  47 tacatagcaaaatatgtgttactcatgccaatactacctatatacaaccaataacacaagcatatcagttaataaaaatatatagattaactcattaaaa 146  Q
    |||||||||||||  ||| || |||||||||| |||| |||| | ||  ||||||||| ||||||||||| |||||||||||||   |||||||||||||    
T  26648848 tacatagcaaaat--gtgctagtcatgccaatgctacttatagataaataataacacaggcatatcagttgataaaaatatatatcataactcattaaaa 26648751  T
Q  147 ctagtattacttattccttcaattgttttcaacacaataagagtatgaaaagagcatcactgtcgtgagtttcatgaagagaattcaaaaacaaaataaa 246  Q
    ||| || |||||  ||||||  ||||| |||||| |   | |||||||||||||||  |||||| ||||||||| || ||||||||||||||||| ||||    
T  26648750 ctaatactactttctccttcctttgttatcaacaaatggacagtatgaaaagagcactactgtcatgagtttcaggaggagaattcaaaaacaaattaaa 26648651  T
Q  247 gttttaagaagaagatgatggtggt 271  Q
    |||||||||| ||||||||||||||    
T  26648650 gttttaagaaaaagatgatggtggt 26648626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 53208780 - 53208685
Alignment:
Q  267 gtggtcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  53208780 gtgggcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgtttcgatcctacttacaaacc 53208685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 32130160 - 32130246
Alignment:
Q  276 gtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  32130160 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 32130246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 263
Target Start/End: Complemental strand, 20047496 - 20047330
Alignment:
Q  100 acacaagcatatcagttaataaaaatatatagattaactcattaaaactagtattac--ttattccttcaattgttttcaacacaata-agagtatgaaa 196  Q
    |||||| |||||||||||||||||||||||||  |||||||| ||||||| | |||   ||  ||||||| ||||| |||||| |||| |||||||||||    
T  20047496 acacaatcatatcagttaataaaaatatatagcataactcatcaaaactaatcttaaaatttatccttcatttgttatcaacaaaatagagagtatgaaa 20047397  T
Q  197 agagcatcactgtcgtgagtttcatgaagagaattcaaaaacaaaataaagttttaagaagaagatg 263  Q
    |||| ||||||||| | ||||| ||||| | ||||||||||||| ||||  |||||||| |||||||    
T  20047396 agagaatcactgtcataagtttgatgaacaaaattcaaaaacaagataactttttaagatgaagatg 20047330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 272 - 362
Target Start/End: Original strand, 7322855 - 7322945
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||  | |||||||||||||    
T  7322855 caaggtagccaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcagttctacttacgaacc 7322945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 9454604 - 9454676
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgctt 344  Q
    ||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  9454604 caaggtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 9454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 96 - 271
Target Start/End: Original strand, 20014618 - 20014793
Alignment:
Q  96 aataacacaagcatatcagttaataaaaatatatagattaactcattaaaactagtattacttattccttcaattgttttcaacacaat-aagagtatga 194  Q
    |||||| ||| |||||||||||||||||| |||||   |||||||| ||| ||||||||||||   |||||| || || |||||| |||  |||||||||    
T  20014618 aataacccaatcatatcagttaataaaaacatatatcataactcatcaaagctagtattacttccgccttcatttcttatcaacaaaatggagagtatga 20014717  T
Q  195 aaagagcatcactgtcgtgagtttcatgaagagaattcaaaaacaaaataaagttttaagaagaagatgatggtggt 271  Q
    ||| ||  |||| ||   |||||||| ||| ||||||||||||||| | ||| |||||||||||||||| |||||||    
T  20014718 aaaaagtgtcaccgtaacgagtttcaggaacagaattcaaaaacaaca-aaaattttaagaagaagatggtggtggt 20014793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 26654680 - 26654636
Alignment:
Q  212 tgagtttcatgaagagaattcaaaaacaaa-ataaagttttaaga 255  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  26654680 tgagtttcatgaagagaattcaaaaacaaatataaagttttaaga 26654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 20006701 - 20006767
Alignment:
Q  97 ataacacaagcatatcagttaataaaaatatatagattaactcattaaaactagtattacttattcc 163  Q
    |||||||||||||| ||| ||||||||| |||||   ||||| ||  ||||||||||||||||||||    
T  20006701 ataacacaagcatagcagataataaaaacatatatcataacttatctaaactagtattacttattcc 20006767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 36167821 - 36167730
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacca 363  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  36167821 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacca 36167730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 19886572 - 19886661
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaac 361  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  19886572 caaggtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 19886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 32775171 - 32775260
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaac 361  Q
    ||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||| |||||||||||||||||||||||||    
T  32775171 caaggtagtcaggaacgagtcccagcatgtaggatcacacgaccttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 32775260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 12859336 - 12859245
Alignment:
Q  271 tcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||    
T  12859336 tcaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcggtcctacttacgaacc 12859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 11600167 - 11600122
Alignment:
Q  270 gtcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatc 315  Q
    |||||||||| ||||| |||||||| || |||||||||||||||||    
T  11600167 gtcaaggtagccaggatcgagtcccagcttgtaggatcgcacgatc 11600122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 1548139 - 1548227
Alignment:
Q  274 aggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  1548139 aggtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttcgatcctacttacgaacc 1548227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 34784608 - 34784519
Alignment:
Q  273 aaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  34784608 aaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacaaacc 34784519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 23033395 - 23033486
Alignment:
Q  271 tcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  23033395 tcaaggtactcaggaacgagtcccagcatgtaggatcgcatgatcttacgtgccacaacacctcgaccgtgcttcgatcctacttacgaacc 23033486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 3117707 - 3117793
Alignment:
Q  276 gtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  3117707 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaacc 3117793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 3277517 - 3277603
Alignment:
Q  271 tcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttac 357  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||    
T  3277517 tcaaggtagtcaggaacgaatcccagcatgtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttcaatcctacttac 3277603  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 362
Target Start/End: Original strand, 20900774 - 20900864
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    |||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||    
T  20900774 caaggtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgactgtgcttcgatcctacttacaaacc 20900864  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 29168608 - 29168561
Alignment:
Q  300 gtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcga 347  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  29168608 gtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcga 29168561  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 15657347 - 15657383
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcg 308  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  15657347 caaggtagtcaggaacgagtcccagcacgtaggatcg 15657383  T

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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 44673172 - 44673260
Alignment:
Q  274 aggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  44673172 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 44673260  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 362
Target Start/End: Original strand, 25438287 - 25438377
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  25438287 caaggtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcgaccgtgctttgatcctacttacgaacc 25438377  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 37154972 - 37154903
Alignment:
Q  276 gtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttc 345  Q
    ||||||| ||||||||||||||  |||||||||||||||| ||||||||||  || |||| |||||||||    
T  37154972 gtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgccacgacatctcgaccgtgcttc 37154903  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 6536545 - 6536596
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgc 323  Q
    |||||||| ||||| |||||||| |||||||||||||||||||| |||||||    
T  6536545 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 6536596  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 21006427 - 21006375
Alignment:
Q  271 tcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgc 323  Q
    ||||||||| ||||| |||||||| ||| |||||||||||||||| |||||||    
T  21006427 tcaaggtagccaggatcgagtcccagcacgtaggatcgcacgatcttacgtgc 21006375  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 24132210 - 24132262
Alignment:
Q  271 tcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgc 323  Q
    ||||||||| ||||| ||| |||| ||| |||||||||||||||| |||||||    
T  24132210 tcaaggtagccaggatcgaatcccagcacgtaggatcgcacgatcttacgtgc 24132262  T

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Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 1718879 - 1718684
Alignment:
Q  48 acatagcaaaatatgtgttactcatgccaatactacctatatacaaccaataacacaagcatatcagttaataaaaatatatagat--taactcattaaa 145  Q
    ||||||||||||  || ||| |||||| ||| |||| |||| | ||  |||||||||||||||||||||||||||||| |||| ||  ||||||||||||    
T  1718879 acatagcaaaat--gtcttagtcatgcaaatcctacttatagataaataataacacaagcatatcagttaataaaaatttatacatcataactcattaaa 1718782  T
Q  146 actagtattacttattccttcaattgttttcaacacaat-aagagtatgaaaagagcatcactgtcgtgagtttcatgaagagaattcaaaaacaaaat 243  Q
    |||| ||||||||  ||||||| ||||| |||||| ||| |||||||| |||||||||||| |||| |||||||||| |||| || |||||||||||||    
T  1718781 actaatattactttctccttcatttgttatcaacaaaatgaagagtat-aaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaaat 1718684  T

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Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 270 - 362
Target Start/End: Complemental strand, 13425768 - 13425676
Alignment:
Q  270 gtcaaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  13425768 gtcaaggtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttatgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 13425676  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 16498000 - 16497910
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  16498000 caaggtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttcggtcctacttacgaacc 16497910  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 2588579 - 2588491
Alignment:
Q  274 aggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 362  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  2588579 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtacttcggtcctacttacgaacc 2588491  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 5650847 - 5650758
Alignment:
Q  274 aggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcgatcctacttacgaacca 363  Q
    ||||||||||||||||||||  ||| |||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  5650847 aggtagtcaggaacgagtccaagcacgtaggatcgcacaatctcacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacca 5650758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 52249575 - 52249500
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgccacagcacctcggccgtgcttcga 347  Q
    ||||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||||  |||||||||||    
T  52249575 caaggtagtcaggaatgagtcccagtacgtaggatcgcacgatcttacgtgccacagcacctctaccgtgcttcga 52249500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 28075449 - 28075500
Alignment:
Q  272 caaggtagtcaggaacgagtcccggcatgtaggatcgcacgatcgtacgtgc 323  Q
    |||||||| ||||| |||||||| || ||||||||||||||||| |||||||    
T  28075449 caaggtagccaggatcgagtcccagcttgtaggatcgcacgatcttacgtgc 28075500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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