View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_19 (Length: 453)
Name: NF4267_low_19
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_19 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 434
Target Start/End: Complemental strand, 30491123 - 30490689
Alignment:
| Q |
12 |
atgaatcaagagaacaatatgttaaattaaacaaaaacatacccnnnnnnngccatcaattgtgacaaattggaattgatgtcatgctgggtcttttatg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30491123 |
atgaatcaagagaacaatatgttaaattaaacaaaaacataccctctttttgccatcaattgtgacaaattggaattgatgtcatgctgggtcttttatg |
30491024 |
T |
|
| Q |
112 |
tagtattcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcattttactt------------attgcaaaaccatttccg |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30491023 |
tagtattcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcattttacttttttaacaaaagattgcaaaaccatttccg |
30490924 |
T |
|
| Q |
200 |
aatttccctacnnnnnnnnnnnnnnnntaacgctggcactagcattgttcgtacgatgaagattaattacagcaatagtaagttccatacaattaaagca |
299 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
30490923 |
aatttccctacaaaaaaatataaaaaataacgctggcactagcattgttcgtacgatgaagattaattacagcaacagtaagttccacacaataaaagca |
30490824 |
T |
|
| Q |
300 |
agccagcgacacatttacatgaaacactccaattctcaatcaaacaaccaactattcatgtaaccatagtttctgtacaagggtgactagaaaaacagct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30490823 |
agccagcgacacatttacatgaaacactccaattctcaatcaaacaaccaactattcatgtaaccatagtttctgtacaagggtgactagcaaaacagct |
30490724 |
T |
|
| Q |
400 |
gtaaagactcattaatgtctcaccaaattcttagg |
434 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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| T |
30490723 |
gtaaagactcatcaatgtctcaccaaattcttagg |
30490689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 389
Target Start/End: Complemental strand, 30523648 - 30523259
Alignment:
| Q |
12 |
atgaatcaagagaacaatatgttaaattaaacaaaaacatacccnnnnnnngccatcaattgtgacaaattggaattgatgtcatgctgggtcttttatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30523648 |
atgaatcaagagaacaatatgttaaattaaacaaaaacataccctttttttgccatcaactgtgacaaattggaattgatgtcatgctgggtcttttatg |
30523549 |
T |
|
| Q |
112 |
tagtattcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcattttactt------------attgcaaaaccatttccg |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30523548 |
tagtattcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcattttacttttttaacaaaagattgcaaaaccatttccg |
30523449 |
T |
|
| Q |
200 |
aatttccctacnnnnnnnnnnnnnnnntaacgctggcactagcattgttcgtacgatgaagattaattacagcaatagtaagttccatacaattaaagca |
299 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
30523448 |
aatttccctacaaaaaaaaaaaaaaaataacgctggcactagcattgttcgtacgatgaagattaattacagcaacagtaagttccacacaataaaagca |
30523349 |
T |
|
| Q |
300 |
agccagcgacacatttacatgaaacactccaattctcaatcaaacaaccaactattcatgtaaccatagtttctgtacaagggtgactag |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30523348 |
agccagcgacacatttacatgaaacactccaattctcaatcaaacaaccaactattcatgtaaccatagtttctgtacaagggtgactag |
30523259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 30508011 - 30507842
Alignment:
| Q |
12 |
atgaatcaagagaacaatatgttaaattaaacaaaaacatacccnnnnnnngccatcaattgtgacaaattggaattgatgtcatgctgggtcttttatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
30508011 |
atgaatcaagagaacaatatgttaaattaaacaaaaacatacc-tttttttgccatgaattgtgacaaattagaattgatgtcatgatgggtcttttatg |
30507913 |
T |
|
| Q |
112 |
tagtattccc-acaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcattttactt |
181 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30507912 |
tagtattccccacaatcaacacaagtttgcagctctcgctccaccttcatcctccttttatcattttactt |
30507842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 241 - 389
Target Start/End: Complemental strand, 30507798 - 30507649
Alignment:
| Q |
241 |
gcattgttcgtacgatgaagattaattacagcaatagtaagttccatacaattaaa-gcaagccagcgacacatttacatgaaacactccaattctcaat |
339 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
30507798 |
gcattgttcgtacaatgaagattaattacagcaactgtaagttccacacaaaaaaaagcaagccagtgacacatttacatgaaattctccaattctcaat |
30507699 |
T |
|
| Q |
340 |
caaacaaccaactattcatgtaaccatagtttctgtacaagggtgactag |
389 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||| |||||||||||||| |
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| T |
30507698 |
caaacaacaaactgttcatgtaaccatagtttctgcacaagggtgactag |
30507649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 30517146 - 30516980
Alignment:
| Q |
12 |
atgaatcaagagaacaatatgttaaattaaacaaaaacatacccnnnnnnngccatcaattgtgacaaattggaattgatgtcatgctgggtcttttatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||| ||||||||||||||| |||||| |
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| T |
30517146 |
atgaatcaagagaacaatatgttaaattaaaccaaaacataccctttttccgccatcaagtgtgacaaatttgaaaggatgtcatgctgggtattttata |
30517047 |
T |
|
| Q |
112 |
tagtattcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcatttta |
178 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||| || ||||||||||||||||||||||| |
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|
| T |
30517046 |
tagtattcccacaatgaacaaaagtttacagctctcacttcagattcatcctccttttatcatttta |
30516980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 30487081 - 30487021
Alignment:
| Q |
118 |
tcccacaatcaacacaagtttgcagctctcactccaccttcatcctccttttatcatttta |
178 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||| |
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|
| T |
30487081 |
tcccacaatgaacacaagtttgcagctctcccttcagcttcatcctccttttatcatttta |
30487021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 30521548 - 30521512
Alignment:
| Q |
398 |
ctgtaaagactcattaatgtctcaccaaattcttagg |
434 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
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|
| T |
30521548 |
ctgtaaagactcatcaatgtctcaccaaattcttagg |
30521512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 28236 - 28200
Alignment:
| Q |
345 |
aaccaactattcatgtaaccatagtttctgtacaagg |
381 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| |
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| T |
28236 |
aaccaactattcatgtaaccatagttgctgcacaagg |
28200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 19285669 - 19285705
Alignment:
| Q |
345 |
aaccaactattcatgtaaccatagtttctgtacaagg |
381 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| |
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|
| T |
19285669 |
aaccaactattcatgtaaccatagttgctgcacaagg |
19285705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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