View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_20 (Length: 451)
Name: NF4267_low_20
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 742554 - 742149
Alignment:
| Q |
15 |
acaaatgtcggtcaattcaacctaagattgaagacatcattggnnnnnnncaattctagtttagacttatagtctttaacgttcaaaatatgcatctcat |
114 |
Q |
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| T |
742554 |
acaaatgtcggtcaattcaacctaagattgaagacatcattg-----------------tttagacttatagtctttaacgttcaaaatatgcatctcat |
742472 |
T |
|
| Q |
115 |
gtctcattcacttattctgaattaaattttcaggtttgttgcacaattaacagaattgttgtgagaagaaggccaaacattgtgctacttttcgaagaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742471 |
gtctcattcacttattctgaattaaattttcaggtttgttgcacaattaacagaa--gttgtgagaagaaggccaaacattgtgctacttttcgaagaag |
742374 |
T |
|
| Q |
215 |
tggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactgatggacaaggcagaactgtggattttacgaacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742373 |
tggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactgatggacaaggcagaactgtggattttacgaacac |
742274 |
T |
|
| Q |
315 |
ggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaa |
414 |
Q |
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| T |
742273 |
ggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaa |
742174 |
T |
|
| Q |
415 |
gtaactgatcatttctggttagaat |
439 |
Q |
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| T |
742173 |
gtaactgatcatttctggttagaat |
742149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 65 - 429
Target Start/End: Complemental strand, 42449659 - 42449289
Alignment:
| Q |
65 |
caattctagtttagacttatagtctttaac---------gttcaaaatatgcatctcatgtctcattcacttattctgaattaaattttcaggtttgttg |
155 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |
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| T |
42449659 |
caattctagtttagacttatagtctttaacttatcttgagttcgaaatatgcatctcatgtctcattcacttattttgaattga-ttttcaggtttgttg |
42449561 |
T |
|
| Q |
156 |
cacaattaacagaattgttgtgagaagaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttat |
255 |
Q |
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| T |
42449560 |
gacgattaacagaa--gttgtgagaagaaggccaaacagtgtgctacttttggaagaagtggagaaagcacatacttcagtaatcaacaaattactttat |
42449463 |
T |
|
| Q |
256 |
atcttagaggatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctcc |
355 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||| |
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| T |
42449462 |
atcttagaggatggaagtttaactgatggacaaggcagaactgtggattttacgaacatggtcattatcatgacctcgaaccttggtgccgatcatctct |
42449363 |
T |
|
| Q |
356 |
aaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttc |
429 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||| |||||| |
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| T |
42449362 |
taagtggactttcaggaaaatgtaccatccaagtagctcacgatcgagtaatgcaggaagtcagtgagcatttc |
42449289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 181 - 416
Target Start/End: Complemental strand, 740319 - 740079
Alignment:
| Q |
181 |
agaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactg |
280 |
Q |
| |
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||||||||| ||| |||| ||||||| || ||||||||||||||||||| |||||| | |||| || ||| | ||||| | ||||||| |||||| |
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| T |
740319 |
agaaggccacacagtgtgatacttttagagcaagtggagaaagcacatatatctgtattaaacactctgcttgaagtcttaaattatgggaggctaactg |
740220 |
T |
|
| Q |
281 |
atggacaaggcagaactgtggattttacga-----acacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaa |
375 |
Q |
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| T |
740219 |
atggacaaggcagaactgtggattttaggataggaacacagtcattatcatgacctcaaaccttggttccgagcatctcctaagtggactttcaggaaaa |
740120 |
T |
|
| Q |
376 |
tgtaccatgcaagttgctcacgatcgagtaatgcaggaagt |
416 |
Q |
| |
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||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
740119 |
tgtaccatggaagttgctcgcgataaagtaatgcaggaagt |
740079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 200 - 418
Target Start/End: Original strand, 10046583 - 10046801
Alignment:
| Q |
200 |
tacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactgatggacaaggcagaactgt |
299 |
Q |
| |
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||||||| || ||||| ||||||||||||| |||||| |||||| || ||| | || |||| || || || ||||||||||| ||||| |||||||| |
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| T |
10046583 |
tactttttgatgaagtagagaaagcacatacatctgtattcaacactctgcttcaagtcctagatgacggaagattaactgatggccaaggaagaactgt |
10046682 |
T |
|
| Q |
300 |
ggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgat |
399 |
Q |
| |
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|||||||| |||||| ||| ||||||||||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
10046683 |
ggattttaggaacacagtcattatcatgacctcaaacctcggcgccgatcatctcataagtggactttcaggaaattgtaccatgcaagttgctcgcgac |
10046782 |
T |
|
| Q |
400 |
cgagtaatgcaggaagtaa |
418 |
Q |
| |
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|||||||||| |||||||| |
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| T |
10046783 |
cgagtaatgctggaagtaa |
10046801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 38708308 - 38708406
Alignment:
| Q |
320 |
ttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaa |
418 |
Q |
| |
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||||||||||||| |||||||| || || |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
38708308 |
ttatcatgacctcaaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctcgtgatcgagtaatgcaggaagtaa |
38708406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 45468309 - 45468462
Alignment:
| Q |
265 |
gatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggac |
364 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||||| ||||| || | ||||||||||| |||||||| ||||| |||||| ||||||| |
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| T |
45468309 |
gatgggaggttgactgacggacaaggcagaactgtggattttagaaacactgtgatcatcatgacctctaaccttggtgctgagcatctcttgagtggac |
45468408 |
T |
|
| Q |
365 |
tttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaa |
418 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
45468409 |
tttcaggaaaatgtaccatgcaagctgctcgcgatcgagtgatgcaggaagtaa |
45468462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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