View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_22 (Length: 446)
Name: NF4267_low_22
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Original strand, 41248999 - 41249423
Alignment:
| Q |
6 |
aggagcacagaacaagtccaactgaaacaaaacattataatgttataaagatagatccaactatcatatgtgcagcaccatgcttgttgtggctacctcc |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41248999 |
aggatcacaaaacaagtccaactgaaacaaaacattataatgttataaagatagatccaactatcatatgtgcagcaccatgcttgttgtggctacctcc |
41249098 |
T |
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| Q |
106 |
aaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaattgtagctatggtttccaatatctttgcttggcttcttcgactt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249099 |
aaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaattgtagctatggtttccaatatctttgcttggcttcttcgactt |
41249198 |
T |
|
| Q |
206 |
cttatatgtttatctcctcgagcctaagcacaaaaaagatatgacatttttaccgaataattaccannnnnnnnnnnnnnnnaaattagcttatcatttt |
305 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41249199 |
ct--tatgtttatctcctcgagcctaagcacaaaaaagatatgacatttttaccgaataattaccatttttcttttctttttaaattagcttatcatttt |
41249296 |
T |
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| Q |
306 |
ccacaaacagaattaagggcgtgtgcaaaatgcattgggccgtttcgtgatcaaaacattgttgcaccaaatgatgattccatacgtgactgaaacacca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41249297 |
ccacaaacagaattaagggcgtgtgcaaaatgcattgggccgtttcgtgatcaaaacattgttgcaccaaatgatgattccatacgtgactgaaacacca |
41249396 |
T |
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| Q |
406 |
taatggttggttttacccaaaatggtg |
432 |
Q |
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| T |
41249397 |
taatggttggttttacccaaaatggtg |
41249423 |
T |
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