View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_38 (Length: 349)
Name: NF4267_low_38
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 26981199 - 26981529
Alignment:
| Q |
19 |
atgcatgtagtc-aag-cataaggaaaatgacatttaataacttctacactcatttctttgtttccaagctgcttatttgtgttctctatgcaactttta |
116 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26981199 |
atgcatgtagtctaagacataaggaaaatgacatttaataacttctacactcatttctttgtttccaagctgcttatttgtgttctctatgcaactttta |
26981298 |
T |
|
| Q |
117 |
ttccactctcttttccatgctcatatctctatgcagcttttaatccactctcatttctttg----ttaacaacttgcttttccttttcctacccatcctt |
212 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
26981299 |
ttccactctcttttccatgcccatatctctatgcagcttttaatccattctcatttctttgttaattaacaacttgctttgccttttcctacccatcctt |
26981398 |
T |
|
| Q |
213 |
taaccaattaatctaaccttctatattccaaacattttttattgtcagtccttcttcattaaatttcccacacgtatttcctataagcattactccacct |
312 |
Q |
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|
||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
26981399 |
taaccaattaatctaaccttctatattccaaacgtcttttattgtcggtccttcttcattaaatatcccacacgtatttcctataagtattactccacct |
26981498 |
T |
|
| Q |
313 |
cttccagactcttgataatattttcatctca |
343 |
Q |
| |
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|||| |||||||||||||||||||||||||| |
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| T |
26981499 |
cttctagactcttgataatattttcatctca |
26981529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 146 - 343
Target Start/End: Original strand, 5334502 - 5334703
Alignment:
| Q |
146 |
tatgcagcttttaatccactctcatttctttgttaacaacttgcttttccttttcctacccatcctttaaccaatt----aatctaaccttctatattcc |
241 |
Q |
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| T |
5334502 |
tatgcagcttataatccactctcatttctttgttaacaacttgctttgccttttcctacccatcctttaaccaattaattaatctaaccttctatattcc |
5334601 |
T |
|
| Q |
242 |
aaacattttttattgtcagtccttcttcattaaatttcccacacgtatttcctataagcattactccacctcttccagactcttgataatattttcatct |
341 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5334602 |
aaacattttttattgtcagtcattcttcattaaatttcccacacgtatttcctataagcattactccacctcttccagactcttgataatattttcatct |
5334701 |
T |
|
| Q |
342 |
ca |
343 |
Q |
| |
|
|| |
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|
| T |
5334702 |
ca |
5334703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 42935045 - 42935147
Alignment:
| Q |
33 |
gcataaggaaaatgacatttaataacttctacactcatttctttgtttccaagctgcttatttgtgttctctatgcaacttttattccactctcttttcc |
132 |
Q |
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||||||| |||||||||||||||| || |||||||||||||| | |||||||||||| |||| |||||||||||| | |||||| ||||||||||||||| |
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| T |
42935045 |
gcataagaaaaatgacatttaatagctactacactcatttctctatttccaagctgcatattcgtgttctctatgtagcttttaatccactctcttttcc |
42935144 |
T |
|
| Q |
133 |
atg |
135 |
Q |
| |
|
||| |
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|
| T |
42935145 |
atg |
42935147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 5334436 - 5334491
Alignment:
| Q |
18 |
gatgcatgtagtcaag-cataaggaaaatgacatttaataacttctacactcattt |
72 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5334436 |
gatgcatgtagtcaaggcataaggaaaatgacatttaataacttctacactcattt |
5334491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 26084069 - 26084191
Alignment:
| Q |
18 |
gatgcatgtagtcaag-cataaggaaaatgacatttaataa----cttctacactcatttctttgtttccaagctgcttatttgtgttctctatgcaact |
112 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||| | || |||||||||||||| | ||||||||||| |||| |||||||||||||| || |
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| T |
26084069 |
gatgcatgtacccaagacataaggaaaatggcatttaattaatagctactacactcatttctcttcttccaagctgcatattcgtgttctctatgcagct |
26084168 |
T |
|
| Q |
113 |
tttattccactctcttttccatg |
135 |
Q |
| |
|
|||| ||||||||| |||||||| |
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|
| T |
26084169 |
tttaatccactctcatttccatg |
26084191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 26084156 - 26084187
Alignment:
| Q |
142 |
tctctatgcagcttttaatccactctcatttc |
173 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
26084156 |
tctctatgcagcttttaatccactctcatttc |
26084187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 9045316 - 9045418
Alignment:
| Q |
33 |
gcataaggaaaatgacatttaataacttctacactcatttctttgtttccaagctgcttatttgtgttctctatgcaacttttattccactctcttttcc |
132 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||| ||||||||||||||| |
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| T |
9045316 |
gcataaggaaaatgacatttaatagctactacactcatttctctgtttccaagctgcatattcgtgttatctatgcagcttttaatccactctcttttcc |
9045415 |
T |
|
| Q |
133 |
atg |
135 |
Q |
| |
|
||| |
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|
| T |
9045416 |
atg |
9045418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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