View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_low_4 (Length: 753)

Name: NF4267_low_4
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_low_4
NF4267_low_4
[»] chr7 (4 HSPs)
chr7 (229-692)||(34838958-34839421)
chr7 (18-133)||(34838750-34838860)
chr7 (243-280)||(20388453-20388490)
chr7 (248-293)||(37952732-37952777)
[»] scaffold0105 (1 HSPs)
scaffold0105 (247-317)||(17751-17821)
[»] chr4 (3 HSPs)
chr4 (247-317)||(8191176-8191246)
chr4 (252-317)||(29420330-29420395)
chr4 (244-285)||(54208578-54208619)
[»] chr3 (6 HSPs)
chr3 (248-337)||(53632626-53632715)
chr3 (244-293)||(53632568-53632617)
chr3 (240-324)||(45313643-45313727)
chr3 (244-279)||(32637132-32637167)
chr3 (252-313)||(53719118-53719180)
chr3 (246-279)||(32635673-32635706)
[»] chr1 (2 HSPs)
chr1 (251-317)||(33067523-33067589)
chr1 (247-280)||(18302273-18302306)
[»] chr5 (4 HSPs)
chr5 (240-317)||(22551097-22551174)
chr5 (252-317)||(17070678-17070744)
chr5 (240-286)||(20416500-20416546)
chr5 (243-280)||(26133299-26133336)
[»] chr8 (1 HSPs)
chr8 (244-293)||(32195530-32195579)
[»] chr6 (1 HSPs)
chr6 (244-285)||(6468426-6468467)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 229 - 692
Target Start/End: Original strand, 34838958 - 34839421
Alignment:
Q  229 atggtgtctcattgtagggactattttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccacatatacacaaa 328  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  34838958 atggtgtttcattgcagggactattttaaaaaacaaaatattttacaaggattttttcctacagaatggatacagtcatcatgtaccacatatacacaaa 34839057  T
Q  329 ggtgacaaatcgtcacaaaagtagggccnnnnnnnnnnnnnnnnnnnnnntttgcattttgtagaaatatacatgaattaaaaccaaaatatttacctaa 428  Q
     | |||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34839058 tgcgacaaatcgtcacaaaagtagggccaaaaactaaaaaaacaaaaaaatttgcattttgtagaaatatacatgaattaaaaccaaaatatttacctaa 34839157  T
Q  429 aaattaatctaccgaagtaggaccattccgtcattcaacacaagggcatatctgtcccatcataatttctttgcttcaataacagacaaaacccaaatca 528  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34839158 aaattaatctaccgaaataggaccatttcgtcattcaacacaagggcatatctgtcccatcataatttctttgcttcaataacagacaaaacccaaatca 34839257  T
Q  529 aaatttaaataatcaaatcttcaatctacaccgtccaaaggtttccatccaaccatccacatcacttctcattacaaagcgagggaaccaatatatttgt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34839258 aaatttaaataatcaaatcttcaatctacaccgtccaaaggtttccatccaacgatccacatcacttctcattacaaagcgagggaaccaatatatttgt 34839357  T
Q  629 ccacactttcactctatctcgctataaaaatcccgctcaaccattttcccatcctaactcgtca 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34839358 ccacactttcactctatctcgctataaaaatcccgctcaaccattttcccatcctaactcgtca 34839421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 34838750 - 34838860
Alignment:
Q  18 cagttaccacgtccaaaacattctgattcttcatgatcttctttttcgtacatcctctcatctcatctcttcaataaaaattaggttaaaatattgtttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||    
T  34838750 cagttaccacgtccaaaacattctgattcttcatgatcttctttttcgtacatcc-----tctcatctcttcaataaaaattaggctaaaatattgtttt 34838844  T
Q  118 catccttgtaaatatg 133  Q
    ||||||||||||||||    
T  34838845 catccttgtaaatatg 34838860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 20388490 - 20388453
Alignment:
Q  243 tagggactattttaaaaaacaatatattttgcaaggac 280  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  20388490 tagggaccattttaaaaaacaaaatattttgcaaggac 20388453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 37952777 - 37952732
Alignment:
Q  248 actattttaaaaaacaatatattttgcaaggactttttcctacaat 293  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||    
T  37952777 actattttaaaaaacaaaatattttgcagggacctttttctacaat 37952732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 17751 - 17821
Alignment:
Q  247 gactattttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccac 317  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||  | |||||| ||||||||||    
T  17751 gactattttaaaaaacaatatattttgcaaggacttttttctacaaaatgagttcagtcaccatgtaccac 17821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 8191176 - 8191246
Alignment:
Q  247 gactattttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccac 317  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||  | |||||| ||||||||||    
T  8191176 gactattttaaaaaacaatatattttgcaaggacttttttctacaaaatgagttcagtcaccatgtaccac 8191246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 29420330 - 29420395
Alignment:
Q  252 ttttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccac 317  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||| | || ||||||||| ||||    
T  29420330 ttttaaaaaacaaaatattttgcaaggaccttttcctacaaaatgggttcaatcatcatgtgccac 29420395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 54208578 - 54208619
Alignment:
Q  244 agggactattttaaaaaacaatatattttgcaaggacttttt 285  Q
    |||||||||||| |||||||| ||||||||||||||| ||||    
T  54208578 agggactattttcaaaaacaaaatattttgcaaggacctttt 54208619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 53632715 - 53632626
Alignment:
Q  248 actattttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccacatatacacaaaggtgacaaa 337  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||| |||   ||| ||||||||| |||| ||| | |||||||||||||    
T  53632715 actattttaaaaaacaaaatattttgcagtgacttttttctacaaaatgagcacaatcatcatgtgccacgtatgcgcaaaggtgacaaa 53632626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 53632617 - 53632568
Alignment:
Q  244 agggactattttaaaaaacaatatattttgcaaggactttttcctacaat 293  Q
    |||||||| |||||||||||| |||||||||| ||||||||| |||||||    
T  53632617 agggactactttaaaaaacaaaatattttgcagggacttttttctacaat 53632568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 324
Target Start/End: Original strand, 45313643 - 45313727
Alignment:
Q  240 ttgtagggactattttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccacatataca 324  Q
    |||||||||||| ||  |||||||| ||| |||| | ||||||||| |||||| |||| | |||||||||||  |||||||||||    
T  45313643 ttgtagggactacttccaaaaacaaaataatttgtatggacttttttctacaaaatgggttcagtcatcatgcgccacatataca 45313727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 32637132 - 32637167
Alignment:
Q  244 agggactattttaaaaaacaatatattttgcaagga 279  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32637132 agggactattttaaaaaacaaaatattttgcaagga 32637167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 53719118 - 53719180
Alignment:
Q  252 ttttaaaaaacaatatattttgcaaggact-ttttcctacaatatggatacagtcatcatgta 313  Q
    ||||||||| ||| |||||||||| ||||| |||| |||||| |||||| |||||||||||||    
T  53719118 ttttaaaaatcaaaatattttgcagggactatttttctacaaaatggattcagtcatcatgta 53719180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 32635706 - 32635673
Alignment:
Q  246 ggactattttaaaaaacaatatattttgcaagga 279  Q
    ||||||||||||||||||| ||||||||||||||    
T  32635706 ggactattttaaaaaacaaaatattttgcaagga 32635673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 33067523 - 33067589
Alignment:
Q  251 attttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccac 317  Q
    |||||||||||||| |||||||| | ||||||||| |||||| |||| | |||||||||||| ||||    
T  33067523 attttaaaaaacaaaatattttgtagggacttttttctacaaaatgggttcagtcatcatgtgccac 33067589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 18302273 - 18302306
Alignment:
Q  247 gactattttaaaaaacaatatattttgcaaggac 280  Q
    |||||||||||||||||| |||||||||||||||    
T  18302273 gactattttaaaaaacaaaatattttgcaaggac 18302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 22551097 - 22551174
Alignment:
Q  240 ttgtagggactattttaaaaaacaatatattttgcaaggactttttcctacaatatggatacagtcatcatgtaccac 317  Q
    ||||||||| | ||||||||| ||| |||||||||| | ||||||| |||||| |||  | |||||||||||||||||    
T  22551097 ttgtagggatttttttaaaaatcaaaatattttgcaggaacttttttctacaaaatgagttcagtcatcatgtaccac 22551174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 17070744 - 17070678
Alignment:
Q  252 ttttaaaaaacaatatattttgcaaggact-ttttcctacaatatggatacagtcatcatgtaccac 317  Q
    ||||||||| ||| |||||||||||||||| |||| |||||| |||||| || ||||||||| ||||    
T  17070744 ttttaaaaatcaaaatattttgcaaggactatttttctacaaaatggattcattcatcatgtgccac 17070678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 20416500 - 20416546
Alignment:
Q  240 ttgtagggactattttaaaaaacaatatattttgcaaggactttttc 286  Q
    ||||||||||||||||||||| ||| |||||||||| | ||||||||    
T  20416500 ttgtagggactattttaaaaaccaaaatattttgcaggtactttttc 20416546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 26133299 - 26133336
Alignment:
Q  243 tagggactattttaaaaaacaatatattttgcaaggac 280  Q
    |||||||||||||||||||||| | |||||||||||||    
T  26133299 tagggactattttaaaaaacaaaaaattttgcaaggac 26133336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 32195530 - 32195579
Alignment:
Q  244 agggactattttaaaaaacaatatattttgcaaggactttttcctacaat 293  Q
    |||||||||||| |||||||| |||||||||| | || ||||||||||||    
T  32195530 agggactattttcaaaaacaaaatattttgcaggaaccttttcctacaat 32195579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 6468426 - 6468467
Alignment:
Q  244 agggactattttaaaaaacaatatattttgcaaggacttttt 285  Q
    ||||||||||||||||||||| |||||||||| |||| ||||    
T  6468426 agggactattttaaaaaacaaaatattttgcagggacctttt 6468467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University