View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_41 (Length: 346)
Name: NF4267_low_41
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_41 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 33 - 249
Target Start/End: Complemental strand, 37914457 - 37914241
Alignment:
| Q |
33 |
tttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattattggttctgcttttgtacttttcctct |
132 |
Q |
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| T |
37914457 |
tttgtcaaggtacattttctgtggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattattggttctgcttttgtacttttcctct |
37914358 |
T |
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| Q |
133 |
cttctcaagattcaagttatttatattattggcacttttccacttctaattacttaaactatgtgcccaataactgttattggagaactcttgaagctaa |
232 |
Q |
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| T |
37914357 |
cttctcaagattcaagttagttatattattggcacttttccacttctaattacttaaactatgtgcacaataactgttattggagaactcttgaagctaa |
37914258 |
T |
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| Q |
233 |
ttattgtaaatatttag |
249 |
Q |
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||||||||||||||||| |
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| T |
37914257 |
ttattgtaaatatttag |
37914241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 37869839 - 37869735
Alignment:
| Q |
47 |
ttttctatggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattattggttctgcttttgtacttttcctctcttctcaagattca |
146 |
Q |
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| T |
37869839 |
ttttctgtggtccgctagtttcgtacatgagagaattcaaccaaaatcactgattattattggttctgcttttgtacttttcctctcttctcaagattca |
37869740 |
T |
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| Q |
147 |
agtta |
151 |
Q |
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|||| |
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| T |
37869739 |
cgtta |
37869735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 37861687 - 37861530
Alignment:
| Q |
22 |
gttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattcaaccaaaatcact-gattattattggttctgcttttg |
120 |
Q |
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| T |
37861687 |
gttgtaacaactttgtcaagca-cattttctgtggtccgctagtttcgtacatgagagaattctaccaaaaaaaaacgattatcattggttctgcttttg |
37861589 |
T |
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| Q |
121 |
tacttttcctctcttctcaagattcaagttattta-tattattggcacttttccacttct |
179 |
Q |
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| T |
37861588 |
aac-tttcttctcttctcaagatttacgttagttattattattggcacatttccacttct |
37861530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 37883436 - 37883369
Alignment:
| Q |
116 |
ttttgtacttttcctctcttctcaagattcaagttatttatattattggcacttttccacttctaatt |
183 |
Q |
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| T |
37883436 |
ttttgtacttttcttctcctctcaagattcacgttagttatattattggcacttttccacttctaatt |
37883369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 37914210 - 37914143
Alignment:
| Q |
246 |
ttagataatatatttttcctcatatgcaggtcattttaggtttgaattaagtaaccaaatcttaatat |
313 |
Q |
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| T |
37914210 |
ttagataatatattttttctcagatgcaagtcattttaggtttgaactaagtaaccaaatcttaatat |
37914143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 37883545 - 37883493
Alignment:
| Q |
22 |
gttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacat |
74 |
Q |
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| T |
37883545 |
gttgtaacaactttcttaaggcactttttctgtggtccgctagtttcgtacat |
37883493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 4374 - 4505
Alignment:
| Q |
56 |
gtccgctagtttcgtacatgagagaattcaaccaaaatcactga----ttattattggttctgcttttgtacttttcctctcttctcaagattcaagtta |
151 |
Q |
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||||| ||||||||||||| ||| ||||| ||||||| |||||| ||||| |||||| || ||||||||||||| ||||||||||||||||| |||| |
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| T |
4374 |
gtccgatagtttcgtacataagacaattctaccaaaaacactgactgattattcttggttttgattttgtacttttcttctcttctcaagattcatgtta |
4473 |
T |
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| Q |
152 |
tttatattattggcacttttccacttctaatt |
183 |
Q |
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| T |
4474 |
gttatattattgggacttcttcacttctaatt |
4505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 13455 - 13392
Alignment:
| Q |
22 |
gttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattca |
85 |
Q |
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| T |
13455 |
gttgtaacaactttgtcaaggcactttttctatggatcactagtttcatacatgagagaattca |
13392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 23783 - 23720
Alignment:
| Q |
22 |
gttgttacaactttggcaaggaactttttctatggtccgctagtttcgtacatgagagaattca |
85 |
Q |
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||||| ||||||||| ||||| ||||||||||||| | |||||||| |||||||||||||||| |
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| T |
23783 |
gttgtaacaactttgtcaaggcactttttctatggatcactagtttcatacatgagagaattca |
23720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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