View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_42 (Length: 341)
Name: NF4267_low_42
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 6731936 - 6732252
Alignment:
| Q |
11 |
cacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccggtaaattcaggaacttgaggagcaccacaccaaaacctt |
110 |
Q |
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| T |
6731936 |
cacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccagtaaattcaggaacttgaggagcaccacaccaaaacctt |
6732035 |
T |
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| Q |
111 |
atttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaatggaacaacaacagacgaatgccagtgaagagcat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6732036 |
atttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaatggaacaacaacagacgaatgccagtcaagagcat |
6732135 |
T |
|
| Q |
211 |
caagtttcttctgaagcttttcttgttgagctggacaagacaaacagttcttgaaagtaggcttcttgctttttcttacaagatctgtgagctctcctgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6732136 |
caagtttcttctgaagcttttcttgttgagctggacaagacaaacaattcttgaaagtaggcttcttgctttttcttacaagatctgtgagctctcctgt |
6732235 |
T |
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| Q |
311 |
gatagactctactattt |
327 |
Q |
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||||| ||||||||||| |
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| T |
6732236 |
gatagtctctactattt |
6732252 |
T |
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