View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_49 (Length: 321)
Name: NF4267_low_49
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 31356689 - 31356394
Alignment:
| Q |
12 |
atgaaaacttggaaaaactgaattgttgccttaaacgcctctagatgnnnnnnnnn-gtttcgtaagaatatatatatnnnnnnn----gagcattgcta |
106 |
Q |
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| T |
31356689 |
atgaaaacttggaaaaactgaattgttgcattaaacgcctctcgatggaaaaaaaaagtttcgtaagaatatatatataaaaaaaaaaagagcattgcta |
31356590 |
T |
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| Q |
107 |
tatcaagcgaaggatgtcttcacgaatatgtgaacgcttgcgcgttgctttaataaaagaagagtttaacttccaactctaacttaacagaaaacaggga |
206 |
Q |
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| T |
31356589 |
tatcaagcgaaggatgtcttcacgaatatgtgaacgcttgcgcgttgctttaataaaagaagagttaaacttccaactctaacttaacagaaaacaggga |
31356490 |
T |
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| Q |
207 |
gggtaaaatggtacacttgaagtaaataatacacagtcgtgaaaaatgcatggctatatattgaatgattggctaccacatgattatgtcattatatc |
304 |
Q |
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| T |
31356489 |
gggt--aatggtacacttgaagtaaataatacacagtcgtgaaaaatgcatggctatatattgaatgattggctaccacatgattatgtcattatatc |
31356394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 31345909 - 31345790
Alignment:
| Q |
96 |
gagcattgctatatcaagcgaaggatgtcttcacgaatat---gtgaacgcttgcgcgttgctttaataaaagaagagtttaacttccaactctaactta |
192 |
Q |
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| T |
31345909 |
gagcatttctatatcaagcaaaggatatcttcacgaatatcatgtgaatgcttacgcgttgctttaataacatatgagttaaactttcaactctaactta |
31345810 |
T |
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| Q |
193 |
acagaaaacagggagggtaa |
212 |
Q |
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| T |
31345809 |
atggaaaacagggagggtaa |
31345790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 31345982 - 31345943
Alignment:
| Q |
19 |
cttggaaaaactgaattgttgccttaaacgcctctagatg |
58 |
Q |
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| T |
31345982 |
cttggaaaaactgaattgttgcattaaacgcctcttgatg |
31345943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 31345573 - 31345535
Alignment:
| Q |
213 |
aatggtacacttgaagtaaataatacacagtcgtgaaaa |
251 |
Q |
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| T |
31345573 |
aatggtgcagttgaagtaaataatacacagtcgtgaaaa |
31345535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 39246269 - 39246183
Alignment:
| Q |
152 |
tgctttaataaaagaagagtttaacttccaactctaacttaacagaaaacagggagggtaaaatggtacacttgaagtaaataatacac |
240 |
Q |
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| T |
39246269 |
tgctttaataaaagaagagtcaaacattcaactctaacttaatggaaaacagggagg--ataatggtgcagtttgagtaaataatacac |
39246183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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