View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_low_5 (Length: 725)

Name: NF4267_low_5
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_low_5
NF4267_low_5
[»] chr6 (2 HSPs)
chr6 (10-709)||(21853428-21854125)
chr6 (507-601)||(16011837-16011931)
[»] chr2 (1 HSPs)
chr2 (10-698)||(32248668-32249353)
[»] chr5 (2 HSPs)
chr5 (434-498)||(38620785-38620849)
chr5 (507-632)||(17629956-17630081)
[»] chr7 (1 HSPs)
chr7 (507-632)||(30219808-30219933)
[»] chr4 (1 HSPs)
chr4 (652-705)||(15801821-15801874)
[»] chr3 (2 HSPs)
chr3 (656-709)||(26891302-26891355)
chr3 (507-632)||(32020206-32020331)


Alignment Details
Target: chr6 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 10 - 709
Target Start/End: Original strand, 21853428 - 21854125
Alignment:
Q  10 acatcatcatgctttggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853428 acatcatcatgctttggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc 21853527  T
Q  110 tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853528 tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc 21853627  T
Q  210 acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853628 acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata 21853727  T
Q  310 aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacataaatgtgtctggtgcc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853728 aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacataaatgtgtctggtgcc 21853827  T
Q  410 tttaatcgattcaagcttgtcttcttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagatannnnnnncctc 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  21853828 tttaatcgattcaagcttgtcttcttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagatagggggt--ctc 21853925  T
Q  510 cctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagttgca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853926 cctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagttgca 21854025  T
Q  610 gaaggtattattgaaaccaaaagatttaagcactctcattaaaaaagaccattctaaagtgtcaaatgcctttgttatatcaattttcagagctaaattt 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21854026 gaaggtattattgaaaccaaaagatttaagcactctcattaaaaaagaccattctaaagtgtcaaatgcctttgttatatcaattttcagagctaaattt 21854125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 601
Target Start/End: Original strand, 16011837 - 16011931
Alignment:
Q  507 ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatc 601  Q
    ||||||||||||| ||||| |||||||||||||| || ||||| || |||||| | || | ||| |  ||||||||||| ||||| |||||||||    
T  16011837 ctccctgtctcactccccttgtgcaattgaaataaccttgtgccttaccatttacagagacagataagaaagctgaattaagaataacttgaatc 16011931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 10 - 698
Target Start/End: Original strand, 32248668 - 32249353
Alignment:
Q  10 acatcatcatgctttggatcactgacctgactaattggattctcccagccatagagagcaaagaagctttccaagcttaaagtttcatacaaattttatc 109  Q
    |||||||||||||||| || ||||| || |  ||||| | ||| || ||||| |||||||| ||||||||||||| | |||| ||||  ||||| || ||    
T  32248668 acatcatcatgctttgaattactgatcttatcaattgaactctacctgccattgagagcaatgaagctttccaagttgaaagcttcacgcaaatcttgtc 32248767  T
Q  110 tgcaactggttgcaggaaagaagcttttggtttcgctttaaaaataggaacacctaagtagttaaaagggaatgtgccaatgttgaaatttaagagttgc 209  Q
    | |||||||||| |    |||||||||||||||  |||| |||||  | ||  | ||||| || || ||||  ||||| ||||||||||| | ||  |||    
T  32248768 tacaactggttgaaaatgagaagcttttggttttcctttgaaaatgagcacctccaagtaattgaaggggagggtgcctatgttgaaattcaggaactgc 32248867  T
Q  210 acaatactatttagtctagcagttgaaatagagttggaataaattgtagactttgaacagttgatgacttgaccagaattgagggcatatctatgaaata 309  Q
    ||  | ||||| | ||||  | |||||||||||||||| || || || |||||||||||||| || ||||| |||||||| ||||||||| ||||||| |    
T  32248868 actgttctattcattctaatatttgaaatagagttggagtatatggttgactttgaacagtttatcacttggccagaattcagggcatatttatgaaaca 32248967  T
Q  310 aatctttgagattgttaagaccagacaatttacctttgcagaatatcataagatcatcagaataaaatgtatgtgaaggaacataaatgtgtctggtgcc 409  Q
    ||||||| || ||||| |  || |||| ||||||||||||||| |||||||||||||| | ||||||||| ||  | |||||    ||||| ||||||||    
T  32248968 aatctttaaggttgtttaatcctgacattttacctttgcagaaaatcataagatcatctgcataaaatgtgtggcagggaactgggatgtgcctggtgcc 32249067  T
Q  410 tttaatcgattcaagcttgtcttcttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagatannnnnnncctc 509  Q
    ||| ||    ||||||||  ||||||| || || || | ||||||||| |||| |||||| ||| |||||||||| || ||||||||||        |||    
T  32249068 tttgataagatcaagctttccttcttctaccagctttgtaatgcttctacttaaaacatcttcagccaaacaaaagagtagaggagatagggggt--ctc 32249165  T
Q  510 cctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagttgca 609  Q
    |||| |||| |||||| ||||| || ||||| || |||||||| |||||  |||||| ||| |||||||||||||||||||| || |||||| | |||||    
T  32249166 cctgcctca-ccccctagtgcagttaaaataaccttgtgcttttccattgactgatacagatagaaaagctgaattgagaattacctgaatccaattgca 32249264  T
Q  610 gaaggtattattgaaaccaaaagatttaagcactctcattaaaaaagaccattctaaagtgtcaaatgcctttgttatatcaattttca 698  Q
     ||| | | || ||| ||||| | ||| || ||| ||| |||||| | |||||| |  |||||||||||| |||| |||||||||||||    
T  32249265 aaagatgtcatggaagccaaatgttttgagaactttcaataaaaatggccattccagggtgtcaaatgccattgtaatatcaattttca 32249353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 38620849 - 38620785
Alignment:
Q  434 ttccacaagtttggaaatgcttctgcttagaacatcctcaaccaaacaaaaaagaagaggagata 498  Q
    |||||||||||| || ||  |||||||||||||||||||  |||||||||| || ||||||||||    
T  38620849 ttccacaagtttagagatatttctgcttagaacatcctctgccaaacaaaagaggagaggagata 38620785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 632
Target Start/End: Original strand, 17629956 - 17630081
Alignment:
Q  507 ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagtt 606  Q
    |||||||||||||||| || || || |||||||| || |||||||| |||||  | || || |||||| | || || || | ||| |||| |||| ||||    
T  17629956 ctccctgtctcacccctctagtacagttgaaataaccttgtgcttttccattgacagaaattgaaagatatgcagactttaaaataacttcaatccagtt 17630055  T
Q  607 gcagaaggtattattgaaaccaaaag 632  Q
    ||||||||| | ||| ||||||||||    
T  17630056 gcagaaggtttcattaaaaccaaaag 17630081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 632
Target Start/End: Complemental strand, 30219933 - 30219808
Alignment:
Q  507 ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagtt 606  Q
    |||||||||||||||| || || || |||||||| || |||||||| |||||  | || || |||||| | || || || | ||| |||| |||| ||||    
T  30219933 ctccctgtctcacccctctagtacagttgaaataaccttgtgcttttccattgacagaaattgaaagatatgcagactttaaaataacttcaatccagtt 30219834  T
Q  607 gcagaaggtattattgaaaccaaaag 632  Q
    ||||||||| | ||| ||||||||||    
T  30219833 gcagaaggtttcattaaaaccaaaag 30219808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 705
Target Start/End: Original strand, 15801821 - 15801874
Alignment:
Q  652 aaaagaccattctaaagtgtcaaatgcctttgttatatcaattttcagagctaa 705  Q
    ||||| |||||| | |||||||||||||||||| |||||||| ||||| |||||    
T  15801821 aaaaggccattccatagtgtcaaatgcctttgtaatatcaatcttcagggctaa 15801874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 709
Target Start/End: Complemental strand, 26891355 - 26891302
Alignment:
Q  656 gaccattctaaagtgtcaaatgcctttgttatatcaattttcagagctaaattt 709  Q
    |||||||||| |||||||| |||||||||||| ||||| || ||| ||||||||    
T  26891355 gaccattctagagtgtcaattgcctttgttatgtcaatcttaagatctaaattt 26891302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 632
Target Start/End: Complemental strand, 32020331 - 32020206
Alignment:
Q  507 ctccctgtctcacccccctggtgcaattgaaatagccctgtgctttcccatttgctgatatagaaagaaaagctgaattgagaatcacttgaatctagtt 606  Q
    |||||||||||||||| || || || |||||||| || |||||||| |||||  | || || |||||| | || || || | ||| |||| |||| ||||    
T  32020331 ctccctgtctcacccctctagtacagttgaaataaccttgtgcttttccattgacagaaattgaaagatatgcagactttaaaataacttcaatccagtt 32020232  T
Q  607 gcagaaggtattattgaaaccaaaag 632  Q
    ||||||||| | ||| ||||||||||    
T  32020231 gcagaaggtttcattaaaaccaaaag 32020206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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