View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_52 (Length: 306)
Name: NF4267_low_52
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 4708068 - 4708361
Alignment:
| Q |
1 |
tttatggtttatataaaaattgaactacaagtgagtgaaaatttgctcttgataaaggataagaatttcatactatgtatattgtgatgacaaaacttca |
100 |
Q |
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| T |
4708068 |
tttatggtttatataaaaattgaactacaagtgtgtgaaaatttgctcttgataaaggataagaatttcatactatgtatattgtgatgacaaa-cttca |
4708166 |
T |
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| Q |
101 |
aaagtatgtttcagccagtaacctgcgacttcgtgtatctctctattaggtcagcaagatctctaaccagtgactttgggtcatatcttataaccacttt |
200 |
Q |
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| T |
4708167 |
aaagtatgattcagccagtaacttgcgacttcgtgtatctctctattaggtcagcaagatctctaaccagtgactttgggtcatatcttataaccacttt |
4708266 |
T |
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| Q |
201 |
aggatcaattagggcgtcaacgactatctgcaaaattatcatggattcttctttnnnnnnnntggtcatggattctataccattaaggttttcat |
295 |
Q |
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| T |
4708267 |
aggatcaagtagggtgtcaacgactatctgcaaaatgatcatggattcttctttaaaaaaaatgatcatggattctataccattaaggttttcat |
4708361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 4745869 - 4745984
Alignment:
| Q |
119 |
taacctgcgacttcgtgtatctctctattaggtcagcaagatctctaaccagtgactttgggtcatatcttataaccactttaggatcaattagggcgtc |
218 |
Q |
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| T |
4745869 |
taacatgcgactttatgtatctctctattaggtcagcaagagctctaatcagtgactttggatcatatattatacccactttaggatcaagtagggagtc |
4745968 |
T |
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| Q |
219 |
aacgactatctgcaaa |
234 |
Q |
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| T |
4745969 |
aacaactatctgcaaa |
4745984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 4745691 - 4745779
Alignment:
| Q |
2 |
ttatggtttatataaaaattgaactacaagtgagtgaaaatttgctcttgataaaggataagaatttcatactatgtatattgtgatga |
90 |
Q |
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| T |
4745691 |
ttatggttaatataaaaattgaactaccagagtgtgaaaatttgctcttgataaagaataagaatttcataccatgtatactatgatga |
4745779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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