View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_low_55 (Length: 303)

Name: NF4267_low_55
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_low_55
NF4267_low_55
[»] chr8 (1 HSPs)
chr8 (110-257)||(18412407-18412554)
[»] chr3 (3 HSPs)
chr3 (252-282)||(7824797-7824827)
chr3 (252-282)||(7827498-7827528)
chr3 (252-282)||(7829886-7829916)
[»] chr1 (1 HSPs)
chr1 (254-282)||(43840366-43840394)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 110 - 257
Target Start/End: Original strand, 18412407 - 18412554
Alignment:
Q  110 tatcaaagtagtgcaccctataatttggctcttctatcatgagtaaatcaaaggtagtattctaaccacccataattagttatgttgtatatataatata 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18412407 tatcaaagtagtgcaccctataatttggctcttgtatcatgagtaaatcaaaggtagtattgtaaccacccataattagttatgttgtatatataatata 18412506  T
Q  210 aacaatagatattacttactttgttatctaaaatgagttgctcattgt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18412507 aacaatagatattacttactttgttatctaaaatgagttgctcattgt 18412554  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 7824797 - 7824827
Alignment:
Q  252 cattgtcctcgtgagtttaactcagttgata 282  Q
    |||||||||||||||||||||||||||||||    
T  7824797 cattgtcctcgtgagtttaactcagttgata 7824827  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 7827498 - 7827528
Alignment:
Q  252 cattgtcctcgtgagtttaactcagttgata 282  Q
    |||||||||||||||||||||||||||||||    
T  7827498 cattgtcctcgtgagtttaactcagttgata 7827528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 7829886 - 7829916
Alignment:
Q  252 cattgtcctcgtgagtttaactcagttgata 282  Q
    |||||||||||||||||||||||||||||||    
T  7829886 cattgtcctcgtgagtttaactcagttgata 7829916  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 43840394 - 43840366
Alignment:
Q  254 ttgtcctcgtgagtttaactcagttgata 282  Q
    |||||||||||||||||||||||||||||    
T  43840394 ttgtcctcgtgagtttaactcagttgata 43840366  T

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