View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_low_57 (Length: 297)

Name: NF4267_low_57
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_low_57
NF4267_low_57
[»] chr1 (18 HSPs)
chr1 (18-138)||(52133275-52133395)
chr1 (188-248)||(27564651-27564711)
chr1 (190-248)||(48716200-48716258)
chr1 (191-248)||(37649322-37649379)
chr1 (180-232)||(26274569-26274621)
chr1 (188-248)||(38595278-38595338)
chr1 (190-248)||(3000443-3000501)
chr1 (190-248)||(41758929-41758987)
chr1 (188-248)||(2582039-2582099)
chr1 (190-242)||(47452238-47452290)
chr1 (189-248)||(9474793-9474852)
chr1 (188-248)||(43256-43316)
chr1 (204-248)||(38632253-38632297)
chr1 (194-241)||(32813378-32813425)
chr1 (57-96)||(52145172-52145211)
chr1 (220-248)||(5958948-5958976)
chr1 (220-248)||(50590948-50590976)
chr1 (194-242)||(51898605-51898653)
[»] scaffold0150 (1 HSPs)
scaffold0150 (18-96)||(8527-8605)
[»] chr4 (14 HSPs)
chr4 (188-248)||(41236471-41236531)
chr4 (187-247)||(24995022-24995082)
chr4 (189-248)||(42044284-42044343)
chr4 (190-247)||(48182967-48183024)
chr4 (190-248)||(6034168-6034226)
chr4 (187-247)||(11511378-11511437)
chr4 (192-248)||(54473453-54473509)
chr4 (189-248)||(23608359-23608418)
chr4 (190-237)||(53352492-53352539)
chr4 (194-242)||(29240016-29240064)
chr4 (194-248)||(19670638-19670692)
chr4 (194-248)||(29547881-29547935)
chr4 (194-248)||(55475315-55475369)
chr4 (194-242)||(50526093-50526141)
[»] chr7 (17 HSPs)
chr7 (189-248)||(19329966-19330025)
chr7 (188-242)||(8080299-8080353)
chr7 (188-248)||(32951409-32951469)
chr7 (185-248)||(3434676-3434739)
chr7 (189-248)||(7389513-7389571)
chr7 (189-248)||(36362138-36362197)
chr7 (189-248)||(38837341-38837400)
chr7 (188-248)||(4999430-4999490)
chr7 (188-248)||(36361841-36361901)
chr7 (189-248)||(40957831-40957890)
chr7 (188-248)||(11044302-11044362)
chr7 (194-241)||(46374746-46374793)
chr7 (194-248)||(38044321-38044375)
chr7 (199-248)||(19436114-19436163)
chr7 (194-235)||(39255846-39255887)
chr7 (220-248)||(8238337-8238365)
chr7 (184-248)||(35137657-35137721)
[»] chr2 (19 HSPs)
chr2 (190-248)||(30915587-30915645)
chr2 (184-248)||(17473144-17473208)
chr2 (188-248)||(28381571-28381631)
chr2 (189-248)||(7465652-7465711)
chr2 (181-248)||(10249291-10249358)
chr2 (182-248)||(28863579-28863646)
chr2 (190-248)||(5574418-5574476)
chr2 (190-248)||(13438467-13438525)
chr2 (187-248)||(27864815-27864876)
chr2 (188-248)||(4060809-4060869)
chr2 (188-248)||(40701602-40701662)
chr2 (189-248)||(19930737-19930796)
chr2 (190-248)||(38882729-38882787)
chr2 (190-247)||(32505566-32505623)
chr2 (194-242)||(20700945-20700993)
chr2 (181-248)||(9058604-9058671)
chr2 (194-241)||(40613824-40613871)
chr2 (194-246)||(17823914-17823966)
chr2 (192-248)||(33436020-33436076)
[»] scaffold0237 (1 HSPs)
scaffold0237 (189-248)||(4153-4212)
[»] chr8 (16 HSPs)
chr8 (189-248)||(14548046-14548105)
chr8 (190-248)||(504039-504097)
chr8 (190-248)||(23122515-23122573)
chr8 (189-241)||(42710211-42710263)
chr8 (189-248)||(34012213-34012272)
chr8 (190-248)||(9122309-9122367)
chr8 (190-248)||(12831171-12831229)
chr8 (194-248)||(40423865-40423919)
chr8 (194-241)||(43414503-43414550)
chr8 (190-248)||(1179858-1179916)
chr8 (190-242)||(15197463-15197515)
chr8 (193-248)||(24307714-24307769)
chr8 (194-248)||(16056323-16056377)
chr8 (194-248)||(32707925-32707979)
chr8 (190-248)||(44507006-44507063)
chr8 (194-242)||(37038609-37038657)
[»] chr6 (9 HSPs)
chr6 (189-248)||(11427742-11427801)
chr6 (189-248)||(17598678-17598737)
chr6 (189-248)||(22880575-22880634)
chr6 (189-248)||(29857951-29858010)
chr6 (189-248)||(32869802-32869861)
chr6 (188-248)||(23128042-23128103)
chr6 (193-248)||(15832701-15832756)
chr6 (194-241)||(31110683-31110730)
chr6 (194-248)||(4231672-4231726)
[»] chr5 (11 HSPs)
chr5 (189-248)||(2740398-2740457)
chr5 (190-248)||(14831938-14831996)
chr5 (190-248)||(35785323-35785381)
chr5 (184-248)||(18520796-18520860)
chr5 (189-248)||(33149555-33149614)
chr5 (190-248)||(31132458-31132516)
chr5 (189-237)||(40145542-40145590)
chr5 (189-236)||(16115249-16115296)
chr5 (202-248)||(36732872-36732918)
chr5 (194-242)||(31009118-31009166)
chr5 (194-242)||(35943814-35943862)
[»] chr3 (16 HSPs)
chr3 (189-248)||(33644324-33644383)
chr3 (190-248)||(53982135-53982193)
chr3 (180-248)||(11095275-11095343)
chr3 (184-248)||(31456813-31456877)
chr3 (189-248)||(48587018-48587077)
chr3 (189-248)||(52629424-52629483)
chr3 (189-248)||(54868812-54868871)
chr3 (190-236)||(49607550-49607596)
chr3 (194-242)||(33118772-33118820)
chr3 (194-241)||(11347844-11347891)
chr3 (194-241)||(26141452-26141499)
chr3 (191-246)||(27714822-27714877)
chr3 (194-244)||(30801655-30801705)
chr3 (191-248)||(36707347-36707404)
chr3 (192-248)||(9563123-9563179)
chr3 (220-248)||(36331277-36331305)
[»] scaffold0321 (1 HSPs)
scaffold0321 (189-248)||(10026-10085)
[»] scaffold1268 (1 HSPs)
scaffold1268 (194-242)||(851-899)
[»] scaffold1267 (1 HSPs)
scaffold1267 (194-242)||(851-899)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 52133395 - 52133275
Alignment:
Q  18 actttgctgaacaaattcaatatcaaggaggttggtgcattgcaggaaaaggttgttgagatgggaatggatgaggtaaagtatatcattattttctatt 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||    
T  52133395 actttgctgaacaaattcaatatcaaggaggttggtgcgttgcaggaaaaggttgttgagatgggaatggatgaggtaaagtatattgttatttgatatt 52133296  T
Q  118 tatatttgttaaataggtcat 138  Q
    ||||||||||||||| |||||    
T  52133295 tatatttgttaaatatgtcat 52133275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 27564651 - 27564711
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  27564651 tagagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 27564711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 48716200 - 48716258
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  48716200 gagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 48716258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 37649379 - 37649322
Alignment:
Q  191 agtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  37649379 agtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 37649322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 26274621 - 26274569
Alignment:
Q  180 tttatttttagagtaatgatacatagacaacctttattaccatacacccttgt 232  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  26274621 tttatttttagagtaatgatacatagacaccctttattcccatacacccttgt 26274569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 38595338 - 38595278
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||    
T  38595338 tagagtaatgatacatagacatccattatttccatacacccttgtacaccccatatattag 38595278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 3000501 - 3000443
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||    
T  3000501 gagtaatgatacatagacatccattatttccatacacccttgtacaccccatatattag 3000443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 41758987 - 41758929
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  41758987 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 41758929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 2582099 - 2582039
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||| ||| ||||||||   ||||||||||||||||| ||||||||||    
T  2582099 tagagtaatgatacataaacaccctttattctaatacacccttgtacacctcatgtattag 2582039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 47452238 - 47452290
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||||||||||||||||||  ||||||| ||||||| ||||||||||||||||    
T  47452238 gagtaatgatacatagacactctttattcccatacatccttgtacaccccatg 47452290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 9474793 - 9474852
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||  |||||||  |||||||||||||||| |||||| |||||    
T  9474793 agagtaatgatacatagacactctttattctcatacacccttgtacatcccatgcattag 9474852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 43316 - 43256
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| | ||||||||   |||||| ||||||||||||||| |||||    
T  43316 tagagtaatgatacatagataccctttattcttatacactcttgtacaccccatgcattag 43256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 38632253 - 38632297
Alignment:
Q  204 agacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||    
T  38632253 agacaccctttattcccatacacccttgtacaccccatgcattag 38632297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 32813425 - 32813378
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||| |||||||||| | |||||| |||||||||||||||||||||||    
T  32813425 aatgttacatagacaccatttattcccatacacccttgtacaccccat 32813378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 52145211 - 52145172
Alignment:
Q  57 ttgcaggaaaaggttgttgagatgggaatggatgaggtaa 96  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  52145211 ttgcaagaaaaggttgttgagatgggaatagatgaggtaa 52145172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 5958948 - 5958976
Alignment:
Q  220 catacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||||||||||||    
T  5958948 catacacccttgtacaccccatgtattag 5958976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 50590948 - 50590976
Alignment:
Q  220 catacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||||||||||||    
T  50590948 catacacccttgtacaccccatgtattag 50590976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 51898605 - 51898653
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||| ||| |||||||| | ||||||||||||||||||||||    
T  51898605 aatgttacataaacaccctttatttctatacacccttgtacaccccatg 51898653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 8605 - 8527
Alignment:
Q  18 actttgctgaacaaattcaatatcaaggaggttggtgcattgcaggaaaaggttgttgagatgggaatggatgaggtaa 96  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  8605 actttgctgaacaaattcaatatcaaggaggttggtaccttgcaggaaaaggttgttgagatgggaatggatgaggtaa 8527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 41236531 - 41236471
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  41236531 tagagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 41236471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 24995022 - 24995082
Alignment:
Q  187 ttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 247  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  24995022 ttagagtaatgatacatagacaccctttattcccatacaccattgtacaccccatgcatta 24995082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 42044284 - 42044343
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||    
T  42044284 agagtaatgatacatagacaccctttatttccatacacccttgtacatcccatgcattag 42044343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 48182967 - 48183024
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 247  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||    
T  48182967 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcatta 48183024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 6034226 - 6034168
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  6034226 gagtaatgatacatagacaccttttattctcatacacccttgtacaccccatgcattag 6034168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 11511378 - 11511437
Alignment:
Q  187 ttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 247  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||||||| |||| ||||    
T  11511378 ttagagtaatgatacatagaca-catttatttccatacacccttgtacacctcatgcatta 11511437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 54473453 - 54473509
Alignment:
Q  192 gtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||  ||| |||||||| |||||||||||||||||| |||||||||||    
T  54473453 gtaatgatacatgaacaccctttattcccatacacccttgtacactccatgtattag 54473509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 23608418 - 23608359
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||||| || |||||||| |||| |||||    
T  23608418 agagtaatgatacatagacatcctttattcccatacatccctgtacacctcatgcattag 23608359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 53352492 - 53352539
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacacc 237  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  53352492 gagtaatgatacatagacaccctttattttcatacacccttgtacacc 53352539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 29240064 - 29240016
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||||||| |||||||| |||||||| |||||||||||||||    
T  29240064 aatgttacatagacaccctttattcccatacactcttgtacaccccatg 29240016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 19670638 - 19670692
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  19670638 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 19670692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 29547881 - 29547935
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  29547881 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 29547935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 55475369 - 55475315
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  55475369 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 55475315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 50526093 - 50526141
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||| ||| |||||||| | ||||||||||||||||||||||    
T  50526093 aatgttacataaacaccctttatttctatacacccttgtacaccccatg 50526141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 19330025 - 19329966
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  19330025 agagtaatgatacatagacaccctttattcccatacacccttgtacaccccatgcattag 19329966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 8080299 - 8080353
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  8080299 tagagtaatgatacatagacaccctttattcccatacacccttgtacaccccatg 8080353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 32951409 - 32951469
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||    
T  32951409 tagagtaatgatacatagacaccccttattctcatacacccttgtacaccccatgtattag 32951469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 3434739 - 3434676
Alignment:
Q  185 ttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  3434739 tttttgagtaatgatacatagacaccctttattcccatacagccttgtacaccccatgcattag 3434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 7389571 - 7389513
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  7389571 agagtaatgatacatagacatcctttattcccatacaccc-tgtacaccccatgtattag 7389513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 36362197 - 36362138
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||    
T  36362197 agagtaatgatacatagacaccctttattctcatacacccttgtacatcccatgtattag 36362138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 38837400 - 38837341
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||    
T  38837400 agagtaatgatacatagacaccctttatttccatacacccttgtacatcccatgcattag 38837341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 4999430 - 4999490
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  4999430 tagagtaatgatacatagacaccttttattctcatacacccttgtacaccccatgcattag 4999490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 36361841 - 36361901
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||  |||||||||||    
T  36361841 tagagtaatgatacatagacaccctttattctcatacacccttgtacattccatgtattag 36361901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 40957890 - 40957831
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||||||||| |||||    
T  40957890 agagtaatgatacatagacacccattattttcatacacccttgtacaccccatgcattag 40957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 11044362 - 11044302
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||||  |||||||  |||||||| ||||||||| |||| |||||    
T  11044362 tagagtaatgatacatagacactctttattttcatacacctttgtacacctcatgcattag 11044302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 46374746 - 46374793
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||| |||||||||| | |||||| |||||||||||||||||||||||    
T  46374746 aatgttacatagacaccatttattcccatacacccttgtacaccccat 46374793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 38044375 - 38044321
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  38044375 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 38044321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 19436114 - 19436163
Alignment:
Q  199 tacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  19436114 tacatagacaccatttattctcatacacccttgtacaccccatgcattag 19436163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 39255846 - 39255887
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtaca 235  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  39255846 aatgttacatagacaccctttattatcatacacccttgtaca 39255887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 8238365 - 8238337
Alignment:
Q  220 catacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||||||||||||    
T  8238365 catacacccttgtacaccccatgtattag 8238337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 35137721 - 35137657
Alignment:
Q  184 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||| |||||| | | ||| ||  |||||||||||||||| |||||| |||||    
T  35137721 tttttagagtaatgatccatagataccatttgttctcatacacccttgtacatcccatgcattag 35137657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 30915645 - 30915587
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  30915645 gagtaatgatacatagacatccattatttccatacacccttgtacaccccatgtattag 30915587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 17473208 - 17473144
Alignment:
Q  184 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  17473208 ttttttgagtaatgatacatagacaccctttattcccatacacccttgtacacctcatgcattag 17473144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 28381571 - 28381631
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||    
T  28381571 tagagtaatgatacatagacaccctttattcccatacatccttgtacaccccatatattag 28381631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 7465652 - 7465711
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  7465652 agagtaatgatacatagacaccctttattcccatacacccttgtacacctcatgcattag 7465711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 10249291 - 10249358
Alignment:
Q  181 ttatttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||| || ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  10249291 ttattattggagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 10249358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 28863646 - 28863579
Alignment:
Q  182 tattttta-gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  28863646 tatttttatgagtaatgatacatagacaccctttattcccatacacccttgtacacctcatgcattag 28863579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 5574418 - 5574476
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |||||    
T  5574418 gagtaatgatacatagacaccctttattcccatacacccttgtacacgccatgcattag 5574476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 13438525 - 13438467
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  13438525 gagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 13438467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 27864876 - 27864815
Alignment:
Q  187 ttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||| |||| ||||||||  |||||||||||||||| ||||||||||||    
T  27864876 ttagagtaatgatacattgacaccctttattctcatacacccttgtacatcccatgtattag 27864815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 4060869 - 4060809
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||| ||| | |||||| |||||||||||||||||||||||| |||||    
T  4060869 tagagtaatgatacataaacatcttttatttccatacacccttgtacaccccatgcattag 4060809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 40701662 - 40701602
Alignment:
Q  188 tagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||| ||| |||||    
T  40701662 tagagtaatgatacatagacaccttttatttccatacacccttgtacacccgatgcattag 40701602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 19930737 - 19930796
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||||| |||| |||||    
T  19930737 agagtaatgatacatagacaccttttattcccatacacccttgtacacctcatgcattag 19930796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 38882729 - 38882787
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||| | | |||||| |||||||||||||||||||||||| |||||    
T  38882729 gagtaatgatacatagagaccatttattcccatacacccttgtacaccccatgcattag 38882787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 32505566 - 32505623
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatta 247  Q
    |||||||||||||||||||  |||||||  ||||||||||||||||||||||| ||||    
T  32505566 gagtaatgatacatagacactctttattctcatacacccttgtacaccccatgcatta 32505623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 20700993 - 20700945
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  20700993 aatgttacatagacaccctttattcccatacacccttgtacaccccatg 20700945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 9058671 - 9058604
Alignment:
Q  181 ttatttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||| ||||||||||| ||| | | |||||||| |||||||| ||||||||||||||| |||||    
T  9058671 ttatttttcgagtaatgatatataaataccctttattcccatacactcttgtacaccccatgcattag 9058604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 40613824 - 40613871
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  40613824 aatgttacatagacaccctttattcccatacacccttgtacaccccat 40613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 17823966 - 17823914
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtatt 246  Q
    |||| |||||||||| ||||||||  |||||||||||||||||||||| ||||    
T  17823966 aatgttacatagacatcctttatttacatacacccttgtacaccccatatatt 17823914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 33436020 - 33436076
Alignment:
Q  192 gtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||| |||||||| | ||||||  |||||||||||||||||| |||| |||||    
T  33436020 gtaatgatgcatagacaccttttattctcatacacccttgtacacctcatgcattag 33436076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 4212 - 4153
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  4212 agagtaatgatacatagacaccatttattcccatacacccttgtacaccccatgcattag 4153  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 14548105 - 14548046
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  14548105 agagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 14548046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 504039 - 504097
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  504039 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 504097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 23122515 - 23122573
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  23122515 gagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 23122573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 42710211 - 42710263
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  42710211 agagtaatgatacacagacaccctttattcccatacacccttgtacaccccat 42710263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 34012213 - 34012272
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| ||||||||  | ||||||||||||||||||||| |||||    
T  34012213 agagtaatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattag 34012272  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 9122367 - 9122309
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||  ||||||| |||||||| ||||||||||||||| |||||    
T  9122367 gagtaatgatacatagacattctttattcccatacactcttgtacaccccatgcattag 9122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 12831229 - 12831171
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||||||||||| |||||    
T  12831229 gagtaatgatacatagacaccatttattctcatacacccttgtacaccccatgcattag 12831171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 40423865 - 40423919
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||    
T  40423865 aatgatacatagacaccttttattcccatacacccttgtacacctcatgtattag 40423919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 43414503 - 43414550
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  43414503 aatgttacatagacaccctttattgccatacacccttgtacaccccat 43414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 1179858 - 1179916
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||| ||||||| |||||||| ||||| | |||||||||||||||| |||||    
T  1179858 gagtaatgatagatagacatcctttattcccatatatccttgtacaccccatgcattag 1179916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 15197515 - 15197463
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||||||||||||||||||   |||||| ||||||||||||||||||| ||||    
T  15197515 gagtaatgatacatagacactttttattcccatacacccttgtacacctcatg 15197463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 24307714 - 24307769
Alignment:
Q  193 taatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  24307714 taatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 24307769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 16056323 - 16056377
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  16056323 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 16056377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 32707925 - 32707979
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  32707925 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 32707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 44507006 - 44507063
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||   ||||||  ||||||||||||||||||||||| |||||    
T  44507006 gagtaatgatacatagacata-tttattctcatacacccttgtacaccccatgcattag 44507063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 37038657 - 37038609
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||| ||| |||||||| | ||||||||||||||||||||||    
T  37038657 aatgttacataaacaccctttatttctatacacccttgtacaccccatg 37038609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 11427801 - 11427742
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  11427801 agagtaatgatacatagacaccctttattctcatacacccttgtacaccccatgcattag 11427742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 17598737 - 17598678
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  17598737 agagtaatgatacatagacaccttttatttccatacacccttgtacaccccatgcattag 17598678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 22880575 - 22880634
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||    
T  22880575 agagtaatgatacatatacaccatttattcccatacacccttgtacaccccatgtattag 22880634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 29858010 - 29857951
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  29858010 agagtaatgatacatagacaccatttattcccatacacccttgtacaccccatgcattag 29857951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 32869861 - 32869802
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  32869861 agagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 32869802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 23128042 - 23128103
Alignment:
Q  188 tagagtaatgatacatagacaaccttt-attaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||| |||||    
T  23128042 tagagtaatgatacatagagaaccttttatttccatacacccttgtacatcccatgcattag 23128103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 15832756 - 15832701
Alignment:
Q  193 taatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||| |||||| |||||||| | |||||||||||||||||||||| |||||    
T  15832756 taatgatacgtagacaccctttattccaatacacccttgtacaccccatgcattag 15832701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 31110683 - 31110730
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  31110683 aatgttacatagacatcctttatttccatacacctttgtacaccccat 31110730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 4231726 - 4231672
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  4231726 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattag 4231672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 2740457 - 2740398
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||    
T  2740457 agagtaatgatacatagacaccctttattcccatacacccttgtacatcccatgcattag 2740398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 14831996 - 14831938
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  14831996 gagtaatgatacatagacaccctttattcccatacatccttgtacaccccatgcattag 14831938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 35785381 - 35785323
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||||||| |||||    
T  35785381 gagtaatgatacatagacaccttttatttccatacacccttgtacaccccatgcattag 35785323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 18520796 - 18520860
Alignment:
Q  184 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| |||||||||||||||||||| ||||||||  |||||||||||||||||| |||| |||||    
T  18520796 ttttaagagtaatgatacatagacaccctttattttcatacacccttgtacacctcatgcattag 18520860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 33149555 - 33149614
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| ||||||||  | ||||||||||||||||||||| |||||    
T  33149555 agagtaatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattag 33149614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 31132516 - 31132458
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||| ||| ||||||||  |||||||||||||||||| |||| |||||    
T  31132516 gagtaatgatacataaacaccctttattttcatacacccttgtacacctcatgcattag 31132458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 40145590 - 40145542
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacacc 237  Q
    |||||||||||||||||||| ||||||||  |||| |||||||||||||    
T  40145590 agagtaatgatacatagacaccctttattctcatatacccttgtacacc 40145542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 16115249 - 16115296
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacac 236  Q
    |||||||||||||||||||| ||||||||  ||||||| |||||||||    
T  16115249 agagtaatgatacatagacaccctttattctcatacactcttgtacac 16115296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 36732872 - 36732918
Alignment:
Q  202 atagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||| |||||||| ||||||||||||||||||| |||| |||||    
T  36732872 atagacaccctttattcccatacacccttgtacacctcatgcattag 36732918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 31009166 - 31009118
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||||||| ||||||||  |||||||| ||||||||||||||    
T  31009166 aatgttacatagacaccctttattctcatacacctttgtacaccccatg 31009118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 35943814 - 35943862
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| ||||||||||   |||||| ||||||||||||||||||||||||    
T  35943814 aatgttacatagacacattttatttccatacacccttgtacaccccatg 35943862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 33644383 - 33644324
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||    
T  33644383 agagtaatgatacatagacaccctttattcccatacacccttatacaccccatgcattag 33644324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 53982193 - 53982135
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||    
T  53982193 gagtaatgatacatagacaccctttattcccatacaaccttgtacaccccatgcattag 53982135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 11095275 - 11095343
Alignment:
Q  180 tttatttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||| ||| |||||||||||||||||||| ||||||||  ||||||||||||||||||| ||| |||||    
T  11095275 tttaatttaagagtaatgatacatagacaccctttattctcatacacccttgtacacccgatgcattag 11095343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 31456877 - 31456813
Alignment:
Q  184 tttttagagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||||||||| |||||    
T  31456877 ttttttgagtaatgatacataaacaccctttattcccatgcacccttgtacaccccatgcattag 31456813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 48587018 - 48587077
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||| |||||| |||||    
T  48587018 agagtaatgatacatagacaccctttattcccatatacccttgtacatcccatgcattag 48587077  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 52629483 - 52629424
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||| |||||| |||||    
T  52629483 agagtaatgatacatagacacccattatttccatacacccttgtacatcccatgcattag 52629424  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 54868812 - 54868871
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||| ||| |||||    
T  54868812 agagtaatgatacatagacaccttttatttccatacacccttgtacaccctatgcattag 54868871  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 49607596 - 49607550
Alignment:
Q  190 gagtaatgatacatagacaacctttattaccatacacccttgtacac 236  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  49607596 gagtaatgatacatagacaccctttattcccatacacccttgtacac 49607550  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 33118772 - 33118820
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| ||| |||||| |||||||| ||||||||||||||||||||||||    
T  33118772 aatgttacgtagacaccctttatttccatacacccttgtacaccccatg 33118820  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 11347844 - 11347891
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||| |||||||||| |||||||| |||||||||||| ||||||||||    
T  11347844 aatggtacatagacaccctttattcccatacacccttatacaccccat 11347891  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 26141452 - 26141499
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccat 241  Q
    |||| |||||||||| |||||||| |||||||| ||||||||||||||    
T  26141452 aatgttacatagacaccctttatttccatacactcttgtacaccccat 26141499  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 27714822 - 27714877
Alignment:
Q  191 agtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtatt 246  Q
    |||||||||||||| |||  |||||||  | |||||||||||||||||||||||||    
T  27714822 agtaatgatacatatacactctttattctcgtacacccttgtacaccccatgtatt 27714877  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 30801655 - 30801705
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatgta 244  Q
    |||| |||||||||| | ||||||  |||||||||||||||||||||||||    
T  30801655 aatgttacatagacaccttttattctcatacacccttgtacaccccatgta 30801705  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 36707347 - 36707404
Alignment:
Q  191 agtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||| | |||||| |||||||  |||||||||| |||| |||||    
T  36707347 agtaatgatacatagacaccttttattcccatacattcttgtacacctcatgcattag 36707404  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 9563179 - 9563123
Alignment:
Q  192 gtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    ||||||||||||||| | |||||||| ||||||||| ||||||| | |||| |||||    
T  9563179 gtaatgatacatagataccctttattcccatacacctttgtacaactcatgcattag 9563123  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 36331277 - 36331305
Alignment:
Q  220 catacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||||||||||||    
T  36331277 catacacccttgtacaccccatgtattag 36331305  T

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Target: scaffold0321 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 10026 - 10085
Alignment:
Q  189 agagtaatgatacatagacaacctttattaccatacacccttgtacaccccatgtattag 248  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||    
T  10026 agagtaatgatacatagacacccattatttccatacacccttgtacaccctatgcattag 10085  T

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Target: scaffold1268 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 851 - 899
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||| ||| |||||||| |||||||| |||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacaccccatg 899  T

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Target: scaffold1267 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 851 - 899
Alignment:
Q  194 aatgatacatagacaacctttattaccatacacccttgtacaccccatg 242  Q
    |||| |||||| ||| |||||||| |||||||| |||||||||||||||    
T  851 aatgttacataaacaccctttattcccatacactcttgtacaccccatg 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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