View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_61 (Length: 284)
Name: NF4267_low_61
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 1045029 - 1044903
Alignment:
| Q |
140 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctctttattcttggtgaagcttacttc |
239 |
Q |
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| T |
1045029 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctgtttattcctggtgaagcttacttc |
1044930 |
T |
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| Q |
240 |
ctagtaacctaagtcagcaaggccaaa |
266 |
Q |
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| T |
1044929 |
ctagtaacctaagtcagcaaagccaaa |
1044903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 1045144 - 1045056
Alignment:
| Q |
55 |
agtaaatgactattaatcattgacggtgagaaatatgtagaaatcagcattagccattagctaatatnnnnnnnttaccaagtgttgtt |
143 |
Q |
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| T |
1045144 |
agtaaatgactattaatcattgacggtgagaacaatgtagaaatcagcattagccattagctaatataaaaaaattaccaagtgttgtt |
1045056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 1024240 - 1024314
Alignment:
| Q |
39 |
atatatattagataaaagtaaatgactattaatcattgacggtgagaaatatgtagaaatcagcattagccatta |
113 |
Q |
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| T |
1024240 |
atatatatcagacaaaagtaaatgaccattgatcattgagggtgagaacactgcagatattagcattagccatta |
1024314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1046316 - 1046272
Alignment:
| Q |
18 |
cttatatgtgtccctgattacatat--atattagataaaagtaaa |
60 |
Q |
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| T |
1046316 |
cttatatgtgtccctcattacatatatatattagataaaagtaaa |
1046272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 40641731 - 40641681
Alignment:
| Q |
36 |
tacatatatattagataaaagtaaatgactattaatcattgacggtgagaa |
86 |
Q |
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| T |
40641731 |
tacatatatattagataaaagtaaacgaccattgatcattgatggtgagaa |
40641681 |
T |
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