View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_63 (Length: 279)
Name: NF4267_low_63
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 39308046 - 39307793
Alignment:
| Q |
18 |
gtataaaaaactataggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattg |
117 |
Q |
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| T |
39308046 |
gtataaaaaactataggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattg |
39307947 |
T |
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| Q |
118 |
atttcctaaatttttctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacac |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39307946 |
attttctaaatttttctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacacttaataacttaaacac |
39307847 |
T |
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| Q |
218 |
atcatttctcacatttcataatctatcaactcactctaaatgtatattcatctc |
271 |
Q |
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| T |
39307846 |
agcatttctcacattttataatctatcaactcaccctaaatgtatattcatctc |
39307793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 39300211 - 39299973
Alignment:
| Q |
19 |
tataaaaaactataggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattga |
118 |
Q |
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| T |
39300211 |
tataaaaacctacaggagctctgatatatcaccatgcagttggttttctgtggcatggtaggtttcaaaatgtacatcttttgccgtc-------attta |
39300119 |
T |
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| Q |
119 |
tttcctaaatttttctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacaca |
218 |
Q |
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| T |
39300118 |
ttttctaaatttttctttgtccgtctaacaaatcaaacttgtgttcaggtatccaatttatgggatccgcgccaaaccaacgcttaaaaacataaaagca |
39300019 |
T |
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| Q |
219 |
tcatttctcacatttcataatctatcaactcactctaaatgtatat |
264 |
Q |
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| T |
39300018 |
gcatttctaacctttcacaatctatctgctcactttaaaagtatat |
39299973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 48 - 268
Target Start/End: Complemental strand, 26563876 - 26563660
Alignment:
| Q |
48 |
caccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattgatttcctaaatttttctttgtccgtctaac |
147 |
Q |
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| T |
26563876 |
caccatgtagttggttttctttggcatggtaggtttcaaaatgtacatcttttgccgtcata----atttatttccaaaatttttctttgtccgtctaac |
26563781 |
T |
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| Q |
148 |
aaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacacatcatttctcacatttcataatctatcaac |
247 |
Q |
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| T |
26563780 |
aaatcaaacttgcgtttaggtatccgattcacgaaatccctgcgggatcaacacttaaaaatttaaacacaacatttttcaccgttcataatctatcaac |
26563681 |
T |
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| Q |
248 |
tcactctaaatgtatattcat |
268 |
Q |
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||| ||||||||||||||||| |
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| T |
26563680 |
tcaatctaaatgtatattcat |
26563660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 26555926 - 26555689
Alignment:
| Q |
22 |
aaaaaactataggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattgattt |
121 |
Q |
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| T |
26555926 |
aaaaaactataggagcagtgatatatcaccatgtagttggttttctgtggcatggtaggtttctaaacatacatattttgccatc----ataatttattt |
26555831 |
T |
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| Q |
122 |
cctaaatttttctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacacatca |
221 |
Q |
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| T |
26555830 |
cttaaatttttc--tgtctttctaacaaatcgaacttgtgtttaggtatctgatttacgagatcc---ctggatcaacgcttaaaaacttaaatgcagca |
26555736 |
T |
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| Q |
222 |
tttctcacatttcataatctatcaactcactctaaatgtatattcat |
268 |
Q |
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| T |
26555735 |
tttctcacctttaataatctatcaactcaatctaattgtctattcat |
26555689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 26554823 - 26554977
Alignment:
| Q |
58 |
ttggttttctgtggcatggtaggtttcaaaatgtacgtcttttg-ccgtcatatataattgatttcctaaatttttctttgtccgtctaacaaatggaac |
156 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||||||||||||| || ||| | |||||| ||| |
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| T |
26554823 |
ttggttttctgtggcatggtaggtttcgaaatgtacatcttttttccgtcatg----atttatttcctaaatttttcttagttcgtttgacaaattgaa- |
26554917 |
T |
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| Q |
157 |
ttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaaca |
216 |
Q |
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|||||||||||||||||||||| | |||| ||||||||||||| |||| |||||||||| |
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| T |
26554918 |
ttgtgtttaggtatccgatttatgtgatcactgctggatcaacaattaaaaacttaaaca |
26554977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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