View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_low_76 (Length: 248)
Name: NF4267_low_76
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_76 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12825551 - 12825310
Alignment:
| Q |
1 |
ggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatgataagatttttaataatcggaactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12825551 |
ggaataagcgaatccgtaatggtttaagacttattcggcattctacgagtttggttttgtggaaagcaaggaatgataagatttttaataatcggaactc |
12825452 |
T |
|
| Q |
101 |
ggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12825451 |
agcggtggatgaaatggtggatgatgtaaaggtgttgacttggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttgg |
12825352 |
T |
|
| Q |
201 |
aatccga-ggaatgccttacgtggctgctttaactacctttg |
241 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
12825351 |
aatccgagggaatgccttacgcggctgctttaactacctttg |
12825310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 35400749 - 35400893
Alignment:
| Q |
58 |
tgtggaaagcaaggaatgataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttgga |
157 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| || || || |||| |||||||||||||||||| |||| ||| ||||| | ||| | ||||| |
|
|
| T |
35400749 |
tgtggaaagcgaggaatgataaggtttttaataaccgaaatccgtatgtgggtgaaatggtggatgatgtcaaggttttgtcttggagatgggctttgga |
35400848 |
T |
|
| Q |
158 |
tagaatttctatgcctccttgtatgtattatgaatggtgttggaa |
202 |
Q |
| |
|
|||||| |||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
35400849 |
tagaatctctatgccaccgtgtatgtattacgaatggtgttggaa |
35400893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 37035516 - 37035710
Alignment:
| Q |
24 |
ttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatgataagatttttaataatcggaactcggcggtggatgaaatggtggatg |
123 |
Q |
| |
|
|||||| | ||||||||| ||||||| |||||| |||||||| || ||||| |||||||||||||||||||| ||| ||||| || || ||||| | |
|
|
| T |
37035516 |
ttaagattaatttggcatgttacgatttgggttttatggaaagctagaaatgacaagatttttaataatcggaatccggaggtggtggatattgtggagg |
37035615 |
T |
|
| Q |
124 |
atgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttggaatccga-ggaatgcctt |
217 |
Q |
| |
|
|| | |||| ||||||||||||||||||||||| | |||| | |||||||||||||||| ||||| ||||||||| |||||| |||||||||| |
|
|
| T |
37035616 |
atattaaggtattgacttggcggtggtcgttggagataattgcaatgcctccttgtatgttctatgagtggtgttgggatccgagggaatgcctt |
37035710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 24189605 - 24189660
Alignment:
| Q |
141 |
tggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtg |
196 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
24189605 |
tggcgatggtctttggatagaatctctatgcctccgtgtatgtactatgaatggtg |
24189660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 47820170 - 47820348
Alignment:
| Q |
24 |
ttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatgataagatttttaataatcggaactcggcggtggatgaaatggtggatg |
123 |
Q |
| |
|
|||||| | ||||||||| ||||||||| |||||| |||||||| |||||||| ||||| || ||||||||||| | || ||||||| || ||||| | |
|
|
| T |
47820170 |
ttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgacaagatcttcaataatcggaatttggtggtggat---attgtggagg |
47820266 |
T |
|
| Q |
124 |
atgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttggaatcc |
205 |
Q |
| |
|
|| | |||| | | |||||| ||||||||||||| | ||| | ||| |||| ||||||| ||||| |||||||||||||| |
|
|
| T |
47820267 |
atattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtgtatgttctatgagtggtgttggaatcc |
47820348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 11780096 - 11780156
Alignment:
| Q |
141 |
tggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtgttgga |
201 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| || |||||||| |||||||||| ||||| |
|
|
| T |
11780096 |
tggcgttggtctttggacagaatttctatgcccccgtgtatgtactatgaatggttttgga |
11780156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 207
Target Start/End: Complemental strand, 47318661 - 47318630
Alignment:
| Q |
176 |
ttgtatgtattatgaatggtgttggaatccga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47318661 |
ttgtatgtattatgaatggtgttggaatccga |
47318630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 38553114 - 38553154
Alignment:
| Q |
45 |
acgattttggttttgtggaaagcaaggaatgataagatttt |
85 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38553114 |
acgatttgggtgttgtggaaagctaggaatgataagatttt |
38553154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University