View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_77 (Length: 243)
Name: NF4267_low_77
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_77 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 20132 - 19922
Alignment:
| Q |
19 |
cttagacactcatgaaaacagaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaag |
118 |
Q |
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| T |
20132 |
cttagacactcatgaaaacagaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaag |
20033 |
T |
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| Q |
119 |
cacttttgtttaacttctgttaaaacataaacaagcttactcaaatttttgttagggaagaaagaactattaacttcttttgactgagaagctttcatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20032 |
cacttttgtttaacttctgttaaaacataaacaagcttactcaaatttttgttagggaagaaagaactattagcttcttttgactgagaagctttcatac |
19933 |
T |
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| Q |
219 |
actagaaggtg |
229 |
Q |
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||||||||||| |
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| T |
19932 |
actagaaggtg |
19922 |
T |
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