View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_low_79 (Length: 242)
Name: NF4267_low_79
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_79 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 55907344 - 55907487
Alignment:
| Q |
99 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55907344 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct |
55907443 |
T |
|
| Q |
199 |
ctctcaaccgtctccaaacagtttctctcagtcacctacactct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55907444 |
ctctcaaccgtctccaaacagtttctctcagtcaccaacactct |
55907487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 55907245 - 55907302
Alignment:
| Q |
3 |
cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttc |
60 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55907245 |
cacagaaagtaaaagaagaagaacaacaacaatgaggttgagtaaactggttgctttc |
55907302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 1036086 - 1036229
Alignment:
| Q |
99 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036086 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct |
1036185 |
T |
|
| Q |
199 |
ctctcaaccgtctccaaacagtttctctcagtcacctacactct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1036186 |
ctctcaaccgtctccaaacagtttctctcagtcaccaacactct |
1036229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 1035987 - 1036044
Alignment:
| Q |
3 |
cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttc |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1035987 |
cacagaaagtaaaagaagaagaagaacaacaatgaggttgaataaactggttgctttc |
1036044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 44575173 - 44575222
Alignment:
| Q |
185 |
gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcacc |
234 |
Q |
| |
|
|||||||||| |||||||| | |||||| ||||||||||||||| ||||| |
|
|
| T |
44575173 |
gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcacc |
44575222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 41900247 - 41900303
Alignment:
| Q |
186 |
ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcacctacactct |
242 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
41900247 |
ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactct |
41900303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 6403901 - 6403858
Alignment:
| Q |
184 |
cgctacttgaaatctctctcaaccgtctccaaacagtttctctc |
227 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
6403901 |
cgctacttgaaatctctctcagccgtatccaaacagttcctctc |
6403858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University