View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_8 (Length: 597)
Name: NF4267_low_8
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 3 - 582
Target Start/End: Original strand, 3272725 - 3273305
Alignment:
| Q |
3 |
tcagtaaccctttccacacctcttatgttactcaagtagtaatatctcatccaattttgcagtatgcatcaatcaatatactatgagccatactgattat |
102 |
Q |
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| T |
3272725 |
tcagtaaccctttccacacctcttatgttactcaagtagtaagatctcatccaattttgcagtatgcatcaatcaatatactatgagccatactgattat |
3272824 |
T |
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| Q |
103 |
atcaatgactgcagttcttcctcttgtcgcaactcgttgagccgcctcttagcatagattgtgaaaaatattgttgtagctacagctatgcagaagccaa |
202 |
Q |
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| T |
3272825 |
atcaatgactgcagttcttcctcttgtcgcaactcgttgagccgcctcttagcatagattgtgaaaaatattgttgtagctacagctatgcagaagccaa |
3272924 |
T |
|
| Q |
203 |
caacattgaaggcgatttgtggagcagataatccatgtgttttgtgtgagacattagccaatgctcgtatcagaattccgctgtagagttagacagttat |
302 |
Q |
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| T |
3272925 |
caacattgaaggcaatttgtggagcagataatccatgtgttttgtgtgagacattagccaatgcccgtatcagaattccgctgtagagttagacagttat |
3273024 |
T |
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| Q |
303 |
agctagtaatgtatttataaaatctattgaaacaaaccaacattgaaaatggcttacaacataagcatatgagttt-aaaacattgtaaaacaagatagg |
401 |
Q |
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| T |
3273025 |
agctagtaatgtatttataaaaactattgaaacaaaccaacattgaaaatggcttacaacataagcatatgagtttaaaaacattgtaaaacaagatagg |
3273124 |
T |
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| Q |
402 |
gaaagagagatcctacgtgtaaatcgaagcaattacttctggtaacattcctgccaaagatccacacaagtaaggaccatattgaacatttgttgcagta |
501 |
Q |
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| T |
3273125 |
gaaagagagatcctacgtgtaaatcgaagcaattacttctggtaacattcctgccaaagatccacacaagtaaggaccatattgaacatttgttgcagta |
3273224 |
T |
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| Q |
502 |
gcacaatagttatagatcatgtaagggaatggagaaaccctgattaaagcaactgctctaaactggtgaaaccaatttcct |
582 |
Q |
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| T |
3273225 |
gcacaatagttatagatcatgtaagggaatggagaaaccctgattaaagcaactgctctaaactggtgaaaccaatttcct |
3273305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 583
Target Start/End: Original strand, 42165890 - 42165987
Alignment:
| Q |
486 |
aacatttgttgcagtagcacaatagttatagatcatgtaagggaatggagaaaccctgattaaagcaactgctctaaactggtgaaaccaatttcctg |
583 |
Q |
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| T |
42165890 |
aacatttgttgccacagcacagtaattgaagaccatataagggaacggagaaatcctgattaaggcaacagctctaaactgatgaaaccagtttcctg |
42165987 |
T |
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