View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_low_81 (Length: 240)
Name: NF4267_low_81
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_81 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 29795304 - 29795083
Alignment:
| Q |
4 |
ctttcaaagattcaacatctaaatcttaatctaagccatcattaccattgaatatgcacttaattatacatgtagaaacactttaactaattttataact |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29795304 |
ctttcaaagattcaacatctaaatcttaatctaagccatcattaccattgaatatgcacttaattatacatgtagaaacactttaattaattttataact |
29795205 |
T |
|
| Q |
104 |
acaacatttataggctttaccattatcactgaatatgctaaaccattgagcatctaatttagtccctgtatatatattagtatacatctgccatattctc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29795204 |
acaacatttataggctttaccattatcactgaatttgctaaaccattgagcatctaatttagtccctgtatatatattagtatacatctgccatattctc |
29795105 |
T |
|
| Q |
204 |
tcaagatttggtctagaacatg |
225 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
29795104 |
tcaagatttggtctacaacatg |
29795083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University