View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_low_82 (Length: 239)
Name: NF4267_low_82
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 5625370 - 5625153
Alignment:
| Q |
4 |
caattcaattttgctgctattactgttattttgttagctggatctgttcttggaagaatgaacattagggcttggatggcttttgtacctctttggctca |
103 |
Q |
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| T |
5625370 |
caattcaattttgctgctattactgttattttgttagctggatctgttcttggaagaatgaacattagggcttggatggcttttgtacctctttggctca |
5625271 |
T |
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| Q |
104 |
ttttctcttacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatctttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625270 |
ttttctcttacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatctttc |
5625171 |
T |
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| Q |
204 |
ttctggaattggtggatt |
221 |
Q |
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|||||||||||||||||| |
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| T |
5625170 |
ttctggaattggtggatt |
5625153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 25671151 - 25670949
Alignment:
| Q |
12 |
ttttgctgctattactgttattttgttagctggatctgttcttggaagaatgaacattagggcttggatggcttttgtacctctttggctcattttctct |
111 |
Q |
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| T |
25671151 |
ttttgctgctattactatgattttgttggctggttctgttcttggaagaatgaatattaaagcttggatggcttttgttcctctttggcttattttttct |
25671052 |
T |
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| Q |
112 |
tacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatctttcttctggaa |
211 |
Q |
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| T |
25671051 |
tatactgttggtgcttttagtctttggggtggtggatttctttatcattggggtgtgattgattattctggtggttatgttattcatctttcttctggaa |
25670952 |
T |
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| Q |
212 |
ttg |
214 |
Q |
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||| |
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| T |
25670951 |
ttg |
25670949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 214
Target Start/End: Complemental strand, 39726555 - 39726413
Alignment:
| Q |
72 |
ggcttggatggcttttgtacctctttggctcattttctcttacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcatt |
171 |
Q |
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|||||||||| ||||| || |||||| | | ||| ||||| ||| |||||||||||||| | ||||||||||| || |||| ||| |||||||| || |
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| T |
39726555 |
ggcttggatgatgtttgtgccactttggttaactttttcttatactattggtgcttttagtttgtggggtggtggtttcttgtttcaatggggtgttatg |
39726456 |
T |
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| Q |
172 |
gatttctctggtggctatgttattcatctttcttctggaattg |
214 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
39726455 |
gattattctggtggttatgttattcatctttcttctgggattg |
39726413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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