View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_low_84 (Length: 239)
Name: NF4267_low_84
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_84 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 9473104 - 9473287
Alignment:
| Q |
13 |
aatataacaacaataactaggccgaagagcatgtcaaagaacaaaaacacttgatgaatgaagaaaaattgaaaaatatgtcaagaaggccatttagcct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9473104 |
aatataacaacaataactaggccgaagagcatgtcaaagaacaaaaacacttgatgaacgaagaaaaatcgaaaaatatgtcaagaaggccatttagcct |
9473203 |
T |
|
| Q |
113 |
ctgcctcatgagctttatgttgtattctctattgatagcagggcaaaaatcctactaactcagtgcaaaaaatatctatttaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
9473204 |
ctgcctcatgagctttatgttgtattctctattgatagcagggcaaaaatccttgtaactcagtgcaaaaaatgtctatttaaa |
9473287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 26861222 - 26861266
Alignment:
| Q |
37 |
aagagcatgtcaaagaacaaaaacacttgatgaatgaagaaaaat |
81 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
26861222 |
aagagcatgtcaaggaagaaaaacacttgaagaatgaagaaaaat |
26861266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University