View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4267_low_9 (Length: 589)

Name: NF4267_low_9
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4267_low_9
NF4267_low_9
[»] chr8 (3 HSPs)
chr8 (65-157)||(13659621-13659713)
chr8 (65-157)||(13718263-13718355)
chr8 (66-147)||(28811057-28811138)
[»] chr4 (9 HSPs)
chr4 (62-149)||(51928846-51928933)
chr4 (62-147)||(20485680-20485765)
chr4 (66-147)||(27487869-27487950)
chr4 (66-147)||(47042612-47042693)
chr4 (66-147)||(27461056-27461137)
chr4 (69-145)||(24354854-24354930)
chr4 (66-143)||(27505196-27505273)
chr4 (70-144)||(27480406-27480480)
chr4 (66-147)||(27477320-27477401)
[»] chr5 (1 HSPs)
chr5 (62-147)||(13912386-13912471)
[»] chr2 (3 HSPs)
chr2 (62-147)||(26204040-26204125)
chr2 (66-155)||(35808794-35808883)
chr2 (69-145)||(42348134-42348210)
[»] chr1 (1 HSPs)
chr1 (65-148)||(42396947-42397030)
[»] chr7 (2 HSPs)
chr7 (66-147)||(37175753-37175834)
chr7 (531-579)||(3664036-3664084)
[»] chr6 (2 HSPs)
chr6 (66-148)||(22685790-22685872)
chr6 (66-148)||(22753196-22753278)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 13659621 - 13659713
Alignment:
Q  65 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgttt 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  13659621 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgttt 13659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 13718263 - 13718355
Alignment:
Q  65 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgttt 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  13718263 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgttt 13718355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 28811057 - 28811138
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28811057 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 28811138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 51928933 - 51928846
Alignment:
Q  62 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaa 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51928933 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgacaa 51928846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 20485680 - 20485765
Alignment:
Q  62 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20485680 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 20485765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 27487950 - 27487869
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27487950 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 27487869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 47042693 - 47042612
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47042693 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 47042612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 27461137 - 27461056
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27461137 cgtcgcctgagagattcgaactctcgcagggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 27461056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 24354930 - 24354854
Alignment:
Q  69 cgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcg 145  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24354930 cgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcg 24354854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 27505196 - 27505273
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaag 143  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27505196 cgtcacctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaag 27505273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 27480480 - 27480406
Alignment:
Q  70 gcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagc 144  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27480480 gcctgagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagc 27480406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 27477401 - 27477320
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    |||| |||||||||||| || ||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  27477401 cgtcacctgagagattcgaaatcttgcggggaaaccccatgtaattagcaggcacacgccttacccactcggccaaagcgac 27477320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 13912471 - 13912386
Alignment:
Q  62 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13912471 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 13912386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 26204125 - 26204040
Alignment:
Q  62 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26204125 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 26204040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 35808883 - 35808794
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgt 155  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  35808883 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgt 35808794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 42348134 - 42348210
Alignment:
Q  69 cgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcg 145  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42348134 cgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcg 42348210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 42396947 - 42397030
Alignment:
Q  65 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 148  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42396947 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgaca 42397030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 37175834 - 37175753
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37175834 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 37175753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 531 - 579
Target Start/End: Original strand, 3664036 - 3664084
Alignment:
Q  531 tgcatcttttgttgcttcataagcatcccaaactacactcacattcttc 579  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  3664036 tgcatcttttgttgcttcatatgcatcccaaaccacactcactttcttc 3664084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 22685790 - 22685872
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 148  Q
    |||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  22685790 cgtcacctaagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagtgaca 22685872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 22753278 - 22753196
Alignment:
Q  66 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 148  Q
    |||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  22753278 cgtcacctaagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagtgaca 22753196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University